Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
RNF4P78317 AC013355.1-201ENST00000562625 723 ntBASIC13.56□□□□□ -0.24
RNF4P78317 MIR3615-201ENST00000581999 87 ntBASIC13.56□□□□□ -0.24
RNF4P78317 AC020914.3-201ENST00000594712 304 ntBASIC13.56□□□□□ -0.24
RNF4P78317 AC090164.2-201ENST00000611487 516 ntBASIC13.56□□□□□ -0.24
RNF4P78317 AP000346.4-201ENST00000614827 381 ntBASIC13.56□□□□□ -0.24
RNF4P78317 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC13.56□□□□□ -0.24
RNF4P78317 LRWD1-209ENST00000626402 138 ntTSL 3 BASIC13.56□□□□□ -0.24
RNF4P78317 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
RNF4P78317 ALDOA-209ENST00000563060 1550 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13.56□□□□□ -0.24
RNF4P78317 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 AC097376.2-205ENST00000610159 5334 ntBASIC13.56□□□□□ -0.24
RNF4P78317 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
RNF4P78317 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC13.56□□□□□ -0.24
RNF4P78317 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC13.56□□□□□ -0.24
RNF4P78317 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC13.56□□□□□ -0.24
RNF4P78317 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.56□□□□□ -0.24
RNF4P78317 WWC2-201ENST00000403733 8826 ntAPPRIS P1 TSL 5 BASIC13.56□□□□□ -0.24
RNF4P78317 CR383656.2-201ENST00000548656 2254 ntBASIC13.56□□□□□ -0.24
RNF4P78317 TNF-208ENST00000449264 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 AC144522.1-201ENST00000625111 1658 ntBASIC13.56□□□□□ -0.24
RNF4P78317 NMBR-201ENST00000258042 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 TCL1A-203ENST00000554012 1391 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC13.56□□□□□ -0.24
RNF4P78317 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.56□□□□□ -0.24
RNF4P78317 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
RNF4P78317 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC13.55□□□□□ -0.24
RNF4P78317 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
RNF4P78317 TBC1D2-203ENST00000375064 3174 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 MPI-203ENST00000535694 1523 ntTSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 SLC9A3P3-201ENST00000457608 2229 ntBASIC13.55□□□□□ -0.24
RNF4P78317 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 PRAMEF8-202ENST00000614831 1592 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
RNF4P78317 PRAMEF7-202ENST00000616979 1592 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
RNF4P78317 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 AC140479.7-201ENST00000636301 2332 ntBASIC13.55□□□□□ -0.24
RNF4P78317 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC13.55□□□□□ -0.24
RNF4P78317 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 NPPA-201ENST00000376476 728 ntTSL 3 BASIC13.55□□□□□ -0.24
RNF4P78317 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC13.55□□□□□ -0.24
RNF4P78317 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 VDAC1P1-201ENST00000439229 848 ntBASIC13.55□□□□□ -0.24
RNF4P78317 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC13.55□□□□□ -0.24
RNF4P78317 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC13.55□□□□□ -0.24
RNF4P78317 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 HLA-J-204ENST00000495278 958 ntBASIC13.55□□□□□ -0.24
RNF4P78317 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.55□□□□□ -0.24
RNF4P78317 SBSN-202ENST00000518157 957 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 IGHVIII-5-2-201ENST00000522505 261 ntBASIC13.55□□□□□ -0.24
RNF4P78317 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC13.55□□□□□ -0.24
RNF4P78317 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC13.55□□□□□ -0.24
RNF4P78317 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC13.55□□□□□ -0.24
RNF4P78317 PSENEN-203ENST00000591949 833 ntTSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC13.55□□□□□ -0.24
RNF4P78317 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13.55□□□□□ -0.24
RNF4P78317 AL358216.1-201ENST00000451601 1657 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 OR2I1P-210ENST00000642037 4691 ntBASIC13.55□□□□□ -0.24
RNF4P78317 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC13.55□□□□□ -0.24
RNF4P78317 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.55□□□□□ -0.24
RNF4P78317 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 AC136759.1-202ENST00000530858 2194 ntBASIC13.55□□□□□ -0.24
RNF4P78317 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 MIR762HG-203ENST00000570025 1429 ntTSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC13.55□□□□□ -0.24
RNF4P78317 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.55□□□□□ -0.24
RNF4P78317 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
RNF4P78317 COCH-203ENST00000460581 2688 ntTSL 2 BASIC13.55□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms