Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 FXNP2-201ENST00000411625 547 ntBASIC12.47□□□□□ -0.41
USF1P22415 SLC16A6P1-201ENST00000413214 1059 ntBASIC12.47□□□□□ -0.41
USF1P22415 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC12.47□□□□□ -0.41
USF1P22415 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC12.47□□□□□ -0.41
USF1P22415 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC12.47□□□□□ -0.41
USF1P22415 FTLP1-201ENST00000449155 526 ntBASIC12.47□□□□□ -0.41
USF1P22415 AC012618.1-201ENST00000461223 412 ntBASIC12.47□□□□□ -0.41
USF1P22415 PARP8-206ENST00000503665 572 ntTSL 4 BASIC12.47□□□□□ -0.41
USF1P22415 MARK2P5-201ENST00000507649 634 ntBASIC12.47□□□□□ -0.41
USF1P22415 AC134698.3-201ENST00000523880 214 ntBASIC12.47□□□□□ -0.41
USF1P22415 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC12.47□□□□□ -0.41
USF1P22415 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC12.47□□□□□ -0.41
USF1P22415 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC12.47□□□□□ -0.41
USF1P22415 AL161670.2-201ENST00000557650 1227 ntBASIC12.47□□□□□ -0.41
USF1P22415 CSH2-206ENST00000560142 749 ntTSL 5 BASIC12.47□□□□□ -0.41
USF1P22415 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC12.47□□□□□ -0.41
USF1P22415 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC12.47□□□□□ -0.41
USF1P22415 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC12.47□□□□□ -0.41
USF1P22415 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 AC004637.1-201ENST00000586675 482 ntTSL 3 BASIC12.47□□□□□ -0.41
USF1P22415 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC12.47□□□□□ -0.41
USF1P22415 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
USF1P22415 SHC1P1-201ENST00000425230 1745 ntBASIC12.47□□□□□ -0.41
USF1P22415 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC12.47□□□□□ -0.41
USF1P22415 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 AL157414.3-201ENST00000624276 1954 ntBASIC12.47□□□□□ -0.41
USF1P22415 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
USF1P22415 CICP24-201ENST00000605464 2705 ntBASIC12.46□□□□□ -0.41
USF1P22415 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC12.46□□□□□ -0.41
USF1P22415 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.41
USF1P22415 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC12.46□□□□□ -0.41
USF1P22415 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 AL157791.1-201ENST00000553667 1699 ntBASIC12.46□□□□□ -0.41
USF1P22415 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC12.46□□□□□ -0.41
USF1P22415 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC12.46□□□□□ -0.41
USF1P22415 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC12.46□□□□□ -0.41
USF1P22415 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC12.46□□□□□ -0.41
USF1P22415 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 AC007274.2-201ENST00000421675 662 ntBASIC12.46□□□□□ -0.41
USF1P22415 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC12.46□□□□□ -0.41
USF1P22415 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC12.46□□□□□ -0.41
USF1P22415 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC12.46□□□□□ -0.41
USF1P22415 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 AC006335.1-201ENST00000445200 547 ntBASIC12.46□□□□□ -0.41
USF1P22415 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC12.46□□□□□ -0.41
USF1P22415 NUP210P1-202ENST00000504322 710 ntBASIC12.46□□□□□ -0.41
USF1P22415 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC12.46□□□□□ -0.41
USF1P22415 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC12.46□□□□□ -0.41
USF1P22415 PSORS1C1-206ENST00000547221 655 ntAPPRIS ALT2 TSL 3 BASIC12.46□□□□□ -0.41
USF1P22415 DUX4L46-201ENST00000566845 751 ntBASIC12.46□□□□□ -0.41
USF1P22415 MIR3907-201ENST00000579424 151 ntBASIC12.46□□□□□ -0.41
USF1P22415 RPS15-202ENST00000585665 467 ntTSL 3 BASIC12.46□□□□□ -0.41
USF1P22415 AC005324.6-201ENST00000587972 613 ntBASIC12.46□□□□□ -0.41
USF1P22415 AC090164.2-201ENST00000611487 516 ntBASIC12.46□□□□□ -0.41
USF1P22415 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC12.46□□□□□ -0.41
USF1P22415 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC12.46□□□□□ -0.41
USF1P22415 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.41
USF1P22415 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC12.46□□□□□ -0.41
USF1P22415 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.42
USF1P22415 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
USF1P22415 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC12.46□□□□□ -0.42
USF1P22415 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.42
USF1P22415 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
USF1P22415 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
USF1P22415 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
USF1P22415 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC12.46□□□□□ -0.42
USF1P22415 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC12.46□□□□□ -0.42
USF1P22415 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC12.46□□□□□ -0.42
USF1P22415 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC12.46□□□□□ -0.42
USF1P22415 SCML4-201ENST00000369020 1491 ntAPPRIS P1 TSL 5 BASIC12.46□□□□□ -0.42
USF1P22415 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC12.46□□□□□ -0.42
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms