Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC11.38□□□□□ -0.59
CXCL1P09341 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC11.38□□□□□ -0.59
CXCL1P09341 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC11.38□□□□□ -0.59
CXCL1P09341 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC11.38□□□□□ -0.59
CXCL1P09341 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC11.38□□□□□ -0.59
CXCL1P09341 RNF34-208ENST00000555076 593 ntTSL 3 BASIC11.38□□□□□ -0.59
CXCL1P09341 AC106730.1-201ENST00000566722 1090 ntBASIC11.38□□□□□ -0.59
CXCL1P09341 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC11.38□□□□□ -0.59
CXCL1P09341 IGHV3OR16-6-201ENST00000568775 360 ntBASIC11.38□□□□□ -0.59
CXCL1P09341 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC11.38□□□□□ -0.59
CXCL1P09341 AL691432.3-201ENST00000621860 400 ntBASIC11.38□□□□□ -0.59
CXCL1P09341 AC084121.4-201ENST00000641598 221 ntBASIC11.38□□□□□ -0.59
CXCL1P09341 AF228730.8-201ENST00000642140 221 ntBASIC11.38□□□□□ -0.59
CXCL1P09341 PI4KAP2-201ENST00000360806 2080 ntBASIC11.38□□□□□ -0.59
CXCL1P09341 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC11.38□□□□□ -0.59
CXCL1P09341 AL359915.2-202ENST00000440150 2469 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 COL22A1-201ENST00000303045 6346 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 ZNF772-204ENST00000427512 5130 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 CLCNKB-202ENST00000375679 2567 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 TMEM173-201ENST00000330794 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC11.38□□□□□ -0.59
CXCL1P09341 OCA2-201ENST00000353809 3068 ntAPPRIS ALT2 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 KIF3A-208ENST00000618515 3333 ntTSL 5 BASIC11.38□□□□□ -0.59
CXCL1P09341 WNT9A-201ENST00000272164 3971 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 CRY2-212ENST00000616623 4204 ntAPPRIS P2 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 LINC00638-201ENST00000555578 2518 ntBASIC11.38□□□□□ -0.59
CXCL1P09341 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 ARMC7-201ENST00000245543 2126 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 EME1-202ENST00000393271 2354 ntAPPRIS ALT2 TSL 5 BASIC11.38□□□□□ -0.59
CXCL1P09341 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC11.38□□□□□ -0.59
CXCL1P09341 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC11.38□□□□□ -0.59
CXCL1P09341 CRYBG1-201ENST00000369066 7553 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 INIP-203ENST00000374242 4233 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 DYRK1A-203ENST00000398956 1590 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 FLAD1-206ENST00000368432 1839 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 AC010970.1-201ENST00000445125 1848 ntBASIC11.37□□□□□ -0.59
CXCL1P09341 TGM7-201ENST00000452443 2313 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 FAM53B-203ENST00000392754 3557 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
CXCL1P09341 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 RANBP17-219ENST00000523189 4588 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 NLRP2-202ENST00000339757 3422 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
CXCL1P09341 PPFIA4-210ENST00000599966 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 NDUFAF7-201ENST00000002125 2176 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 DLGAP1-205ENST00000400150 5332 ntTSL 5 BASIC11.37□□□□□ -0.59
CXCL1P09341 RRBP1-202ENST00000360807 3727 ntAPPRIS P2 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 RBM47-201ENST00000295971 4056 ntAPPRIS ALT1 TSL 5 BASIC11.37□□□□□ -0.59
CXCL1P09341 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC11.37□□□□□ -0.59
CXCL1P09341 NEK7-201ENST00000367383 586 ntTSL 2 BASIC11.37□□□□□ -0.59
CXCL1P09341 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC11.37□□□□□ -0.59
CXCL1P09341 AL133267.1-201ENST00000398220 340 ntBASIC11.37□□□□□ -0.59
CXCL1P09341 SPDYE17-201ENST00000412399 783 ntBASIC11.37□□□□□ -0.59
CXCL1P09341 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
CXCL1P09341 AC034105.1-201ENST00000563488 319 ntBASIC11.37□□□□□ -0.59
CXCL1P09341 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC11.37□□□□□ -0.59
CXCL1P09341 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC11.37□□□□□ -0.59
CXCL1P09341 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC11.37□□□□□ -0.59
CXCL1P09341 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC11.37□□□□□ -0.59
CXCL1P09341 ARHGAP45-210ENST00000590214 4191 ntAPPRIS ALT2 TSL 5 BASIC11.37□□□□□ -0.59
CXCL1P09341 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC11.37□□□□□ -0.59
CXCL1P09341 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 CELF4-218ENST00000591287 3757 ntAPPRIS ALT1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC11.37□□□□□ -0.59
CXCL1P09341 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 ARHGAP33-204ENST00000378944 4219 ntAPPRIS ALT2 TSL 2 BASIC11.37□□□□□ -0.59
CXCL1P09341 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 SLC25A18-202ENST00000399813 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 TBX6-202ENST00000395224 1803 ntAPPRIS P1 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 RAPGEF4-AS1-202ENST00000435328 4625 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 TRHDE-AS1-202ENST00000435350 2966 ntTSL 2 BASIC11.37□□□□□ -0.59
CXCL1P09341 AL008727.1-201ENST00000564460 4728 ntTSL 2 BASIC11.37□□□□□ -0.59
CXCL1P09341 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC11.37□□□□□ -0.59
CXCL1P09341 GHET1-201ENST00000627071 1906 ntBASIC11.37□□□□□ -0.59
CXCL1P09341 TBC1D14-208ENST00000451522 4149 ntAPPRIS ALT1 TSL 5 BASIC11.37□□□□□ -0.59
CXCL1P09341 PDZD4-209ENST00000544474 3418 ntTSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 ENG-201ENST00000344849 3059 ntAPPRIS P3 TSL 1 (best) BASIC11.37□□□□□ -0.59
CXCL1P09341 POPDC2-201ENST00000264231 1679 ntTSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC11.36□□□□□ -0.59
CXCL1P09341 MAGED4-201ENST00000375626 2495 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 ASAH2B-202ENST00000374007 3715 ntAPPRIS P1 TSL 3 BASIC11.36□□□□□ -0.59
CXCL1P09341 PLCB3-201ENST00000279230 4197 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
CXCL1P09341 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.36□□□□□ -0.59
Retrieved 100 of 98,524 protein–RNA pairs in 62.5 ms