Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 AC103563.1-201ENST00000429316 123 ntBASIC21.28■■□□□ 1
RAPGEF3O95398 AL031587.2-201ENST00000445483 414 ntTSL 5 BASIC21.28■■□□□ 1
RAPGEF3O95398 B9D1-206ENST00000461069 923 ntTSL 2 BASIC21.28■■□□□ 1
RAPGEF3O95398 AC026412.1-206ENST00000502273 206 ntBASIC21.28■■□□□ 1
RAPGEF3O95398 ISL1-203ENST00000511384 981 ntTSL 5 BASIC21.28■■□□□ 1
RAPGEF3O95398 AC090820.1-201ENST00000519722 591 ntBASIC21.28■■□□□ 1
RAPGEF3O95398 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC21.28■■□□□ 1
RAPGEF3O95398 IFITM2-205ENST00000602569 605 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
RAPGEF3O95398 AL450487.2-201ENST00000615934 407 ntBASIC21.28■■□□□ 1
RAPGEF3O95398 AL137077.2-201ENST00000635124 1608 ntBASIC21.28■■□□□ 1
RAPGEF3O95398 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC21.28■■□□□ 1
RAPGEF3O95398 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC21.28■■□□□ 1
RAPGEF3O95398 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC21.28■■□□□ 1
RAPGEF3O95398 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
RAPGEF3O95398 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
RAPGEF3O95398 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
RAPGEF3O95398 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
RAPGEF3O95398 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
RAPGEF3O95398 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
RAPGEF3O95398 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC21.27■■□□□ 1
RAPGEF3O95398 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC21.27■■□□□ 1
RAPGEF3O95398 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
RAPGEF3O95398 CELP-203ENST00000624767 2414 ntTSL 5 BASIC21.27■■□□□ 1
RAPGEF3O95398 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
RAPGEF3O95398 C22orf42-201ENST00000382097 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RAPGEF3O95398 MIR611-201ENST00000384869 67 ntBASIC21.27■■□□□ 1
RAPGEF3O95398 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC21.27■■□□□ 1
RAPGEF3O95398 BUD23-204ENST00000423497 1219 ntTSL 5 BASIC21.27■■□□□ 1
RAPGEF3O95398 AC092810.2-201ENST00000431570 362 ntBASIC21.27■■□□□ 1
RAPGEF3O95398 AC004893.2-203ENST00000482799 796 ntTSL 3 BASIC21.27■■□□□ 1
RAPGEF3O95398 ACER3-205ENST00000526597 1269 ntTSL 2 BASIC21.27■■□□□ 1
RAPGEF3O95398 KRT8P34-201ENST00000577607 1044 ntBASIC21.27■■□□□ 1
RAPGEF3O95398 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
RAPGEF3O95398 Metazoa_SRP.128-201ENST00000620543 314 ntBASIC21.27■■□□□ 1
RAPGEF3O95398 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC21.27■■□□□ 1
RAPGEF3O95398 ANXA3-202ENST00000503570 1524 ntTSL 5 BASIC21.27■■□□□ 1
RAPGEF3O95398 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC21.27■■□□□ 1
RAPGEF3O95398 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC21.27■■□□□ 1
RAPGEF3O95398 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC21.27■■□□□ 1
RAPGEF3O95398 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RAPGEF3O95398 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC21.27■■□□□ 1
RAPGEF3O95398 NFATC4-226ENST00000556279 2924 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
RAPGEF3O95398 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
RAPGEF3O95398 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC21.27■□□□□ 0.99
RAPGEF3O95398 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
RAPGEF3O95398 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC21.26■□□□□ 0.99
RAPGEF3O95398 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
RAPGEF3O95398 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC21.26■□□□□ 0.99
RAPGEF3O95398 TRPM3-205ENST00000361823 1260 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 AIG1-203ENST00000367596 559 ntTSL 2 BASIC21.26■□□□□ 0.99
RAPGEF3O95398 TCEA3-201ENST00000374601 1197 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 TMEM14B-201ENST00000379530 787 ntTSL 2 BASIC21.26■□□□□ 0.99
RAPGEF3O95398 ATRAID-202ENST00000405489 1059 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 RPL18AP16-201ENST00000424057 531 ntBASIC21.26■□□□□ 0.99
RAPGEF3O95398 LINC00399-201ENST00000439008 414 ntTSL 2 BASIC21.26■□□□□ 0.99
RAPGEF3O95398 AL356000.1-201ENST00000441073 1238 ntBASIC21.26■□□□□ 0.99
RAPGEF3O95398 SNRPD2P2-201ENST00000473818 333 ntBASIC21.26■□□□□ 0.99
RAPGEF3O95398 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC21.26■□□□□ 0.99
RAPGEF3O95398 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC21.26■□□□□ 0.99
RAPGEF3O95398 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
RAPGEF3O95398 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
RAPGEF3O95398 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 NEK2-201ENST00000366998 1865 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RAPGEF3O95398 DSG1-202ENST00000462981 1857 ntTSL 2 BASIC21.26■□□□□ 0.99
RAPGEF3O95398 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
RAPGEF3O95398 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC21.25■□□□□ 0.99
RAPGEF3O95398 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
RAPGEF3O95398 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RAPGEF3O95398 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RAPGEF3O95398 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
RAPGEF3O95398 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RAPGEF3O95398 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
RAPGEF3O95398 CELA3A-202ENST00000374663 649 ntTSL 2 BASIC21.25■□□□□ 0.99
RAPGEF3O95398 HNRNPA1P25-201ENST00000422644 937 ntBASIC21.25■□□□□ 0.99
RAPGEF3O95398 AC147651.3-201ENST00000429872 731 ntTSL 2 BASIC21.25■□□□□ 0.99
RAPGEF3O95398 PGAP2-207ENST00000463452 931 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
RAPGEF3O95398 AC011676.2-201ENST00000518520 584 ntTSL 2 BASIC21.25■□□□□ 0.99
RAPGEF3O95398 AP003040.1-201ENST00000532044 1024 ntBASIC21.25■□□□□ 0.99
RAPGEF3O95398 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
RAPGEF3O95398 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC21.25■□□□□ 0.99
RAPGEF3O95398 FXYD3-206ENST00000603524 742 ntTSL 3 BASIC21.25■□□□□ 0.99
RAPGEF3O95398 FXYD3-211ENST00000604804 564 ntTSL 4 BASIC21.25■□□□□ 0.99
RAPGEF3O95398 MIR6893-201ENST00000613458 69 ntBASIC21.25■□□□□ 0.99
RAPGEF3O95398 AL353658.2-201ENST00000629794 519 ntTSL 5 BASIC21.25■□□□□ 0.99
RAPGEF3O95398 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms