Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 ANKRD19P-201ENST00000338192 862 ntBASIC15.66■□□□□ 0.1
FOXN3O00409 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXN3O00409 AC079776.1-201ENST00000401540 1152 ntBASIC15.66■□□□□ 0.1
FOXN3O00409 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXN3O00409 HOMER2P2-201ENST00000451621 847 ntBASIC15.66■□□□□ 0.1
FOXN3O00409 KLF2P4-201ENST00000451959 1225 ntBASIC15.66■□□□□ 0.1
FOXN3O00409 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXN3O00409 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
FOXN3O00409 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.66■□□□□ 0.1
FOXN3O00409 SMPDL3B-201ENST00000373888 1548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXN3O00409 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXN3O00409 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXN3O00409 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXN3O00409 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.66■□□□□ 0.1
FOXN3O00409 CORO7-201ENST00000251166 3540 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXN3O00409 E2F3P2-201ENST00000447755 1422 ntBASIC15.66■□□□□ 0.1
FOXN3O00409 PCCB-215ENST00000482086 1436 ntTSL 3 BASIC15.66■□□□□ 0.1
FOXN3O00409 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
FOXN3O00409 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXN3O00409 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
FOXN3O00409 DDC-213ENST00000617822 1809 ntTSL 3 BASIC15.66■□□□□ 0.1
FOXN3O00409 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.66■□□□□ 0.1
FOXN3O00409 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
FOXN3O00409 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
FOXN3O00409 AC090643.2-201ENST00000623442 2029 ntBASIC15.65■□□□□ 0.1
FOXN3O00409 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 LINC01671-201ENST00000419628 1775 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
FOXN3O00409 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 MIR326-201ENST00000362220 95 ntBASIC15.65■□□□□ 0.1
FOXN3O00409 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.65■□□□□ 0.1
FOXN3O00409 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.65■□□□□ 0.1
FOXN3O00409 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC15.65■□□□□ 0.1
FOXN3O00409 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC15.65■□□□□ 0.1
FOXN3O00409 U91328.1-201ENST00000437528 223 ntBASIC15.65■□□□□ 0.1
FOXN3O00409 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC15.65■□□□□ 0.1
FOXN3O00409 AC100850.1-201ENST00000506768 649 ntBASIC15.65■□□□□ 0.1
FOXN3O00409 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC15.65■□□□□ 0.1
FOXN3O00409 AC005586.2-201ENST00000563946 837 ntBASIC15.65■□□□□ 0.1
FOXN3O00409 HNRNPA1P48-202ENST00000565308 961 ntBASIC15.65■□□□□ 0.1
FOXN3O00409 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
FOXN3O00409 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC15.65■□□□□ 0.1
FOXN3O00409 AC008687.7-202ENST00000637404 953 ntBASIC15.65■□□□□ 0.1
FOXN3O00409 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 ARID3B-201ENST00000346246 4271 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC15.65■□□□□ 0.1
FOXN3O00409 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC15.65■□□□□ 0.1
FOXN3O00409 AL022313.4-201ENST00000562756 2046 ntBASIC15.65■□□□□ 0.1
FOXN3O00409 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC15.65■□□□□ 0.1
FOXN3O00409 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.1
FOXN3O00409 SRPX-205ENST00000538295 1780 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.1
FOXN3O00409 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXN3O00409 ZNF607-201ENST00000355202 4364 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.09
FOXN3O00409 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXN3O00409 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC15.64■□□□□ 0.09
FOXN3O00409 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FOXN3O00409 TMBIM7P-202ENST00000641474 1516 ntBASIC15.64■□□□□ 0.09
FOXN3O00409 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXN3O00409 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXN3O00409 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FOXN3O00409 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXN3O00409 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXN3O00409 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXN3O00409 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXN3O00409 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
FOXN3O00409 BOLA2P3-201ENST00000404566 256 ntBASIC15.64■□□□□ 0.09
FOXN3O00409 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.64■□□□□ 0.09
FOXN3O00409 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC15.64■□□□□ 0.09
FOXN3O00409 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC15.64■□□□□ 0.09
FOXN3O00409 SKA2-202ENST00000437036 625 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXN3O00409 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXN3O00409 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
FOXN3O00409 SNX29P1-201ENST00000548357 1007 ntBASIC15.64■□□□□ 0.09
FOXN3O00409 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
FOXN3O00409 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.64■□□□□ 0.09
FOXN3O00409 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
FOXN3O00409 MIR4783-201ENST00000580343 82 ntBASIC15.64■□□□□ 0.09
FOXN3O00409 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXN3O00409 AC104506.1-201ENST00000609247 429 ntBASIC15.64■□□□□ 0.09
FOXN3O00409 RPS24-214ENST00000613865 538 ntTSL 5 BASIC15.64■□□□□ 0.09
FOXN3O00409 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.64■□□□□ 0.09
FOXN3O00409 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC15.64■□□□□ 0.09
FOXN3O00409 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXN3O00409 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXN3O00409 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
FOXN3O00409 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.09
FOXN3O00409 LRIF1-202ENST00000485275 1796 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
FOXN3O00409 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms