Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 MSRA-203ENST00000441698 788 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 RN7SL11P-201ENST00000471305 293 ntBASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 AP001505.2-201ENST00000616815 443 ntBASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 ABR-205ENST00000544583 5595 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 AC082651.3-201ENST00000474667 1947 ntTSL 2 BASIC18.61■□□□□ 0.57
CHMP4AQ9BY43 CTBP1-AS2-206ENST00000581398 5652 ntBASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 PPARGC1B-203ENST00000394320 4803 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 PPCDC-201ENST00000342932 2250 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 RHOH-220ENST00000615083 2156 ntAPPRIS P1 TSL 4 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 ABHD4-201ENST00000216327 716 ntTSL 5 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 AL596276.2-201ENST00000447525 331 ntBASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 AC024681.1-201ENST00000521917 487 ntBASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 BCAT2-203ENST00000545387 1272 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 KCNN3-202ENST00000358505 1658 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 AC092053.3-201ENST00000641308 4975 ntBASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CHMP4AQ9BY43 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 LINC01225-202ENST00000562339 2113 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 AL359183.1-201ENST00000623796 2132 ntBASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 KIAA1614-AS1-201ENST00000415647 1440 ntTSL 2 BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 BARHL2-201ENST00000370445 1979 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 CD3EAP-202ENST00000589804 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 OR2R1P-201ENST00000441404 914 ntBASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 ATRAID-207ENST00000606999 956 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 DDX5-235ENST00000630471 473 ntTSL 4 BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 AC092299.1-201ENST00000632679 757 ntBASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CHMP4AQ9BY43 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms