Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 TDRD5-201ENST00000294848 3525 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 ADAM33-207ENST00000619289 3195 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 PPP6R2-203ENST00000395741 3304 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
ATG4AQ8WYN0 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 RNF167-201ENST00000262482 1915 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 F10-203ENST00000409306 1450 ntTSL 3 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 AC134312.5-201ENST00000568031 1313 ntBASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 TNFAIP8L1-201ENST00000327473 3814 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 TNFAIP8L1-202ENST00000536716 3845 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 DGCR5-201ENST00000399539 862 ntBASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 BCRP1-201ENST00000444246 691 ntBASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 AC106760.1-201ENST00000508690 800 ntBASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 MPZ-204ENST00000491222 1824 ntTSL 2 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 COG3-206ENST00000617493 1809 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 MGC16275-201ENST00000499670 2501 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 MED15-204ENST00000406969 3210 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 LRP5L-202ENST00000402859 1661 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
ATG4AQ8WYN0 ZNF34-201ENST00000343459 1901 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
ATG4AQ8WYN0 ZNF34-202ENST00000429371 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
ATG4AQ8WYN0 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
ATG4AQ8WYN0 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
ATG4AQ8WYN0 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC15.21■□□□□ 0.02
ATG4AQ8WYN0 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
ATG4AQ8WYN0 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
ATG4AQ8WYN0 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 HIF3A-206ENST00000472815 1709 ntTSL 2 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 LINC02486-201ENST00000604157 3000 ntBASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 CLASP2-204ENST00000399362 7282 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 ACSM2A-202ENST00000396104 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 RPN2-202ENST00000373622 2348 ntTSL 2 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 BAATP1-201ENST00000412284 1225 ntBASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 FTLP10-202ENST00000505798 471 ntBASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 MIR5189-201ENST00000577370 114 ntBASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 MTG2-201ENST00000370823 2929 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 CD48-201ENST00000368045 1793 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC15.2■□□□□ 0.02
ATG4AQ8WYN0 TINF2-215ENST00000626689 1643 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms