Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 MDH2-205ENST00000461263 648 ntTSL 2 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 USP32P3-202ENST00000583574 611 ntTSL 3 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC11.8□□□□□ -0.52
VPS13CQ709C8 CFAP36-204ENST00000406691 1575 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
VPS13CQ709C8 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 AC022080.1-201ENST00000366255 781 ntBASIC11.79□□□□□ -0.52
VPS13CQ709C8 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 AC022113.2-201ENST00000504935 704 ntTSL 3 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 RPL18-205ENST00000549273 1036 ntTSL 2 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 AL137793.2-201ENST00000632635 659 ntTSL 3 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 AL139260.2-201ENST00000622355 2171 ntTSL 2 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 FAU-201ENST00000279259 461 ntTSL 2 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 UQCC2-201ENST00000374214 432 ntTSL 5 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 AC018814.1-201ENST00000418972 357 ntTSL 3 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 FOXP4-AS1-202ENST00000432751 409 ntTSL 2 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 AL121845.1-201ENST00000447343 464 ntTSL 2 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 ANKRD36C-208ENST00000619511 737 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 TEKT4P2-202ENST00000559466 1312 ntBASIC11.79□□□□□ -0.52
VPS13CQ709C8 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 ACTN1-205ENST00000538545 2813 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 SAPCD1-AS1-202ENST00000419679 461 ntTSL 3 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 LINC01693-202ENST00000430123 357 ntTSL 3 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 TPT1P6-201ENST00000458298 514 ntBASIC11.79□□□□□ -0.52
VPS13CQ709C8 EHF-208ENST00000530286 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 ACSM5-206ENST00000575584 1130 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 RN7SL300P-201ENST00000582522 318 ntBASIC11.79□□□□□ -0.52
VPS13CQ709C8 LINC00244-201ENST00000625073 613 ntBASIC11.79□□□□□ -0.52
VPS13CQ709C8 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 DIRAS3-201ENST00000370981 1973 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 AP2M1-207ENST00000439647 1950 ntAPPRIS ALT1 TSL 2 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC11.79□□□□□ -0.52
VPS13CQ709C8 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
VPS13CQ709C8 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 RPL15-208ENST00000435882 1063 ntAPPRIS P1 TSL 2 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 C12orf57-204ENST00000540506 551 ntTSL 2 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 AC005323.2-202ENST00000581304 493 ntTSL 3 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 AL591424.3-201ENST00000614278 872 ntBASIC11.78□□□□□ -0.52
VPS13CQ709C8 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 GOLGA8UP-201ENST00000527159 1755 ntBASIC11.78□□□□□ -0.52
VPS13CQ709C8 COX4I1-208ENST00000564903 1481 ntTSL 2 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 NECTIN1-203ENST00000341398 1377 ntTSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 C1orf87-202ENST00000450089 1307 ntTSL 5 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 AC064801.2-201ENST00000625052 1303 ntBASIC11.78□□□□□ -0.52
VPS13CQ709C8 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 AC111170.3-201ENST00000624282 2464 ntBASIC11.78□□□□□ -0.52
VPS13CQ709C8 AL589740.1-203ENST00000433637 1984 ntTSL 2 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 CMTM1-201ENST00000328020 981 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 CMTM1-202ENST00000332695 624 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 CMTM1-205ENST00000379500 1064 ntAPPRIS P4 TSL 1 (best) BASIC11.78□□□□□ -0.52
VPS13CQ709C8 AL157823.1-201ENST00000403727 628 ntBASIC11.78□□□□□ -0.52
VPS13CQ709C8 AL592301.1-201ENST00000439501 864 ntTSL 3 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 AC133141.1-201ENST00000443015 339 ntBASIC11.78□□□□□ -0.52
VPS13CQ709C8 KRT18P62-201ENST00000446618 1287 ntBASIC11.78□□□□□ -0.52
VPS13CQ709C8 AC106869.1-201ENST00000448713 577 ntTSL 4 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 TREX1-203ENST00000456089 629 ntTSL 3 BASIC11.78□□□□□ -0.52
VPS13CQ709C8 AC011676.3-201ENST00000520606 294 ntTSL 5 BASIC11.78□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms