Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC19.06■□□□□ 0.64
HOXC9P31274 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
HOXC9P31274 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 NBAT1-201ENST00000566912 1940 ntTSL 2 BASIC19.06■□□□□ 0.64
HOXC9P31274 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
HOXC9P31274 AC232323.1-201ENST00000540724 2099 ntBASIC19.06■□□□□ 0.64
HOXC9P31274 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 SYNGR1-204ENST00000381535 1295 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 BX679664.3-201ENST00000414070 555 ntBASIC19.06■□□□□ 0.64
HOXC9P31274 RPL35P9-201ENST00000446059 350 ntBASIC19.06■□□□□ 0.64
HOXC9P31274 RN7SL396P-201ENST00000471086 295 ntBASIC19.06■□□□□ 0.64
HOXC9P31274 AC113935.1-201ENST00000471722 555 ntBASIC19.06■□□□□ 0.64
HOXC9P31274 AC010285.2-201ENST00000510240 569 ntTSL 4 BASIC19.06■□□□□ 0.64
HOXC9P31274 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC19.06■□□□□ 0.64
HOXC9P31274 NAMA-206ENST00000605377 509 ntTSL 5 BASIC19.06■□□□□ 0.64
HOXC9P31274 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC19.06■□□□□ 0.64
HOXC9P31274 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC19.06■□□□□ 0.64
HOXC9P31274 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC19.06■□□□□ 0.64
HOXC9P31274 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC19.06■□□□□ 0.64
HOXC9P31274 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
HOXC9P31274 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC19.06■□□□□ 0.64
HOXC9P31274 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 LINC00299-202ENST00000442956 2342 ntTSL 2 BASIC19.06■□□□□ 0.64
HOXC9P31274 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC19.06■□□□□ 0.64
HOXC9P31274 FGD5P1-202ENST00000614866 2498 ntBASIC19.06■□□□□ 0.64
HOXC9P31274 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC19.05■□□□□ 0.64
HOXC9P31274 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 AC022007.1-201ENST00000383808 1897 ntTSL 2 BASIC19.05■□□□□ 0.64
HOXC9P31274 HTR3E-203ENST00000425359 1326 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC19.05■□□□□ 0.64
HOXC9P31274 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC19.05■□□□□ 0.64
HOXC9P31274 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC19.05■□□□□ 0.64
HOXC9P31274 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 PPIA-201ENST00000355968 818 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 RNVU1-8-201ENST00000364272 125 ntBASIC19.05■□□□□ 0.64
HOXC9P31274 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 CYB561D1-203ENST00000393709 620 ntAPPRIS ALT1 TSL 4 BASIC19.05■□□□□ 0.64
HOXC9P31274 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
HOXC9P31274 PPIA-208ENST00000489459 907 ntTSL 2 BASIC19.05■□□□□ 0.64
HOXC9P31274 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC19.05■□□□□ 0.64
HOXC9P31274 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC19.05■□□□□ 0.64
HOXC9P31274 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 PPIA-210ENST00000620047 827 ntTSL 5 BASIC19.05■□□□□ 0.64
HOXC9P31274 LINC00244-201ENST00000625073 613 ntBASIC19.05■□□□□ 0.64
HOXC9P31274 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
HOXC9P31274 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 CAB39L-204ENST00000409130 1411 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 ATL3-203ENST00000538786 1920 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
HOXC9P31274 MICB-201ENST00000252229 2446 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 GSN-209ENST00000449733 2702 ntTSL 2 BASIC19.05■□□□□ 0.64
HOXC9P31274 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 SLC9A7P1-201ENST00000554295 3311 ntBASIC19.05■□□□□ 0.64
HOXC9P31274 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HOXC9P31274 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC9P31274 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
HOXC9P31274 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC9P31274 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
HOXC9P31274 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC19.04■□□□□ 0.64
HOXC9P31274 FGR-203ENST00000374005 2729 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC9P31274 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC9P31274 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC19.04■□□□□ 0.64
HOXC9P31274 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC9P31274 FGGY-203ENST00000371212 1640 ntTSL 2 BASIC19.04■□□□□ 0.64
HOXC9P31274 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC9P31274 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC9P31274 STRADA-243ENST00000640086 1925 ntTSL 5 BASIC19.04■□□□□ 0.64
HOXC9P31274 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC9P31274 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC9P31274 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC9P31274 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC9P31274 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
HOXC9P31274 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC9P31274 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC9P31274 CHRNA1-204ENST00000409323 1585 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HOXC9P31274 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC19.04■□□□□ 0.64
HOXC9P31274 PSMB8-AS1-204ENST00000429600 996 ntTSL 2 BASIC19.04■□□□□ 0.64
HOXC9P31274 RAMP3-203ENST00000496212 543 ntAPPRIS ALT2 TSL 4 BASIC19.04■□□□□ 0.64
HOXC9P31274 REEP5-205ENST00000504247 480 ntTSL 5 BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms