Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 NAV2-AS2-201ENST00000533767 782 ntTSL 2 BASIC17.76■□□□□ 0.43
COL5A3P25940 SRP54-AS1-204ENST00000556705 580 ntTSL 2 BASIC17.76■□□□□ 0.43
COL5A3P25940 AC120498.7-201ENST00000562876 330 ntBASIC17.76■□□□□ 0.43
COL5A3P25940 AC079414.2-201ENST00000567157 1104 ntBASIC17.76■□□□□ 0.43
COL5A3P25940 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC17.76■□□□□ 0.43
COL5A3P25940 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
COL5A3P25940 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A3P25940 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC17.76■□□□□ 0.43
COL5A3P25940 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A3P25940 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
COL5A3P25940 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
COL5A3P25940 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.75■□□□□ 0.43
COL5A3P25940 TMEM145-203ENST00000598766 2011 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
COL5A3P25940 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
COL5A3P25940 Z98885.3-201ENST00000624882 1757 ntBASIC17.75■□□□□ 0.43
COL5A3P25940 DERL3-202ENST00000318109 860 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A3P25940 OLFML2B-202ENST00000367938 1153 ntTSL 2 BASIC17.75■□□□□ 0.43
COL5A3P25940 VPREB1-202ENST00000403807 755 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A3P25940 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC17.75■□□□□ 0.43
COL5A3P25940 AC074389.3-201ENST00000450458 454 ntTSL 3 BASIC17.75■□□□□ 0.43
COL5A3P25940 AC079250.1-201ENST00000456046 531 ntBASIC17.75■□□□□ 0.43
COL5A3P25940 HNRNPA3P6-201ENST00000472163 1006 ntBASIC17.75■□□□□ 0.43
COL5A3P25940 AC078852.1-201ENST00000515842 441 ntTSL 3 BASIC17.75■□□□□ 0.43
COL5A3P25940 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC17.75■□□□□ 0.43
COL5A3P25940 OR2T11-201ENST00000625105 1072 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
COL5A3P25940 LINC01869-204ENST00000635639 1047 ntTSL 5 BASIC17.75■□□□□ 0.43
COL5A3P25940 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A3P25940 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A3P25940 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.75■□□□□ 0.43
COL5A3P25940 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.75■□□□□ 0.43
COL5A3P25940 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A3P25940 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
COL5A3P25940 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC17.75■□□□□ 0.43
COL5A3P25940 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC17.75■□□□□ 0.43
COL5A3P25940 C2orf68-201ENST00000306336 2837 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A3P25940 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A3P25940 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A3P25940 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A3P25940 C19orf18-201ENST00000314391 915 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A3P25940 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
COL5A3P25940 MAL-204ENST00000354078 831 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A3P25940 RPS9-202ENST00000391751 510 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
COL5A3P25940 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC17.75■□□□□ 0.43
COL5A3P25940 AL161733.1-201ENST00000421067 462 ntTSL 3 BASIC17.75■□□□□ 0.43
COL5A3P25940 AC092810.2-201ENST00000431570 362 ntBASIC17.75■□□□□ 0.43
COL5A3P25940 AC011995.2-201ENST00000452701 574 ntTSL 4 BASIC17.75■□□□□ 0.43
COL5A3P25940 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC17.75■□□□□ 0.43
COL5A3P25940 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC17.75■□□□□ 0.43
COL5A3P25940 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC17.75■□□□□ 0.43
COL5A3P25940 KF455155.1-201ENST00000604493 303 ntBASIC17.75■□□□□ 0.43
COL5A3P25940 EIF3F-209ENST00000640290 372 ntTSL 5 BASIC17.75■□□□□ 0.43
COL5A3P25940 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
COL5A3P25940 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
COL5A3P25940 SALL4P6-201ENST00000429385 1691 ntBASIC17.75■□□□□ 0.43
COL5A3P25940 CICP14-201ENST00000629111 2732 ntBASIC17.74■□□□□ 0.43
COL5A3P25940 LINC00205-201ENST00000433465 1391 ntTSL 3 BASIC17.74■□□□□ 0.43
COL5A3P25940 DDC-204ENST00000426377 1700 ntTSL 3 BASIC17.74■□□□□ 0.43
COL5A3P25940 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
COL5A3P25940 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A3P25940 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.74■□□□□ 0.43
COL5A3P25940 GLIPR1L2-204ENST00000550916 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A3P25940 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A3P25940 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
COL5A3P25940 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.74■□□□□ 0.43
COL5A3P25940 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A3P25940 TRBV5-7-201ENST00000390378 343 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
COL5A3P25940 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A3P25940 RPSAP6-201ENST00000417882 882 ntBASIC17.74■□□□□ 0.43
COL5A3P25940 AP001596.1-201ENST00000429340 781 ntTSL 5 BASIC17.74■□□□□ 0.43
COL5A3P25940 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A3P25940 AC027612.2-202ENST00000445955 1199 ntBASIC17.74■□□□□ 0.43
COL5A3P25940 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC17.74■□□□□ 0.43
COL5A3P25940 AC025594.1-201ENST00000469533 543 ntBASIC17.74■□□□□ 0.43
COL5A3P25940 AC009055.1-201ENST00000562656 781 ntTSL 3 BASIC17.74■□□□□ 0.43
COL5A3P25940 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC17.74■□□□□ 0.43
COL5A3P25940 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A3P25940 ACAD8-201ENST00000281182 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A3P25940 GDAP1L1-201ENST00000342560 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A3P25940 SNAPC2-206ENST00000597584 1413 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A3P25940 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC17.74■□□□□ 0.43
COL5A3P25940 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A3P25940 ART3-201ENST00000341029 1517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
COL5A3P25940 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
COL5A3P25940 AGPAT3-218ENST00000546158 2199 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
COL5A3P25940 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC17.73■□□□□ 0.43
COL5A3P25940 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A3P25940 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A3P25940 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
COL5A3P25940 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.73■□□□□ 0.43
COL5A3P25940 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC17.73■□□□□ 0.43
COL5A3P25940 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.73■□□□□ 0.43
COL5A3P25940 RHOC-207ENST00000369638 1028 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
COL5A3P25940 RPL10-203ENST00000406022 748 ntTSL 3 BASIC17.73■□□□□ 0.43
COL5A3P25940 AL158207.2-201ENST00000414926 266 ntTSL 5 BASIC17.73■□□□□ 0.43
COL5A3P25940 FDPSP7-201ENST00000429043 1054 ntBASIC17.73■□□□□ 0.43
COL5A3P25940 AL513211.1-201ENST00000429053 483 ntTSL 3 BASIC17.73■□□□□ 0.43
COL5A3P25940 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC17.73■□□□□ 0.43
COL5A3P25940 HIST1H2APS2-201ENST00000454426 370 ntBASIC17.73■□□□□ 0.43
COL5A3P25940 AC092612.1-201ENST00000514501 998 ntBASIC17.73■□□□□ 0.43
COL5A3P25940 IGHEP1-201ENST00000521393 651 ntBASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms