Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
SMC1BQ8NDV3 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 CHRNA1-205ENST00000409542 1460 ntTSL 3 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 IZUMO1-201ENST00000332955 1621 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 TMEM60-201ENST00000257663 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 GALP-201ENST00000357330 938 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 AL137244.1-201ENST00000422931 865 ntBASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 GALP-202ENST00000440823 889 ntTSL 5 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 GOLGA6L16P-201ENST00000441780 1299 ntBASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 KRT18P37-201ENST00000520711 1282 ntBASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 HNRNPA1P5-201ENST00000558213 966 ntBASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 ZNF286A-212ENST00000580259 527 ntTSL 4 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 CSTP2-201ENST00000610599 398 ntBASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 AC092850.2-201ENST00000623821 2697 ntBASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 IL12RB2-205ENST00000541374 3849 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC17.18■□□□□ 0.34
SMC1BQ8NDV3 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 KRTAP6-1-201ENST00000329122 500 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 AL513523.2-202ENST00000427283 2040 ntBASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 TMEM14B-208ENST00000467317 1224 ntTSL 2 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 AC099548.2-201ENST00000491047 571 ntTSL 4 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 AL513478.2-202ENST00000621949 835 ntTSL 3 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 MIR600HG-201ENST00000449175 5984 ntBASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 REXO1L2P-201ENST00000425429 2069 ntBASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 RBP1-205ENST00000492918 1487 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 SIGLEC20P-201ENST00000595243 1311 ntBASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
SMC1BQ8NDV3 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 AC079328.2-201ENST00000561241 3354 ntBASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 CST9-201ENST00000376971 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
SMC1BQ8NDV3 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms