Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 OR2I1P-210ENST00000642037 4691 ntBASIC15.76■□□□□ 0.11
VCPP55072 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC15.76■□□□□ 0.11
VCPP55072 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.76■□□□□ 0.11
VCPP55072 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
VCPP55072 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC15.76■□□□□ 0.11
VCPP55072 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 CICP4-201ENST00000447359 2812 ntBASIC15.76■□□□□ 0.11
VCPP55072 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.76■□□□□ 0.11
VCPP55072 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VCPP55072 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC15.75■□□□□ 0.11
VCPP55072 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC15.75■□□□□ 0.11
VCPP55072 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.75■□□□□ 0.11
VCPP55072 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
VCPP55072 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC15.75■□□□□ 0.11
VCPP55072 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC15.75■□□□□ 0.11
VCPP55072 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC15.75■□□□□ 0.11
VCPP55072 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC15.75■□□□□ 0.11
VCPP55072 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC15.75■□□□□ 0.11
VCPP55072 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.75■□□□□ 0.11
VCPP55072 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC15.75■□□□□ 0.11
VCPP55072 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.75■□□□□ 0.11
VCPP55072 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC15.75■□□□□ 0.11
VCPP55072 AC244157.2-201ENST00000616239 1006 ntBASIC15.75■□□□□ 0.11
VCPP55072 COX6A1P2-201ENST00000620597 330 ntBASIC15.75■□□□□ 0.11
VCPP55072 AC009084.3-201ENST00000623356 437 ntBASIC15.75■□□□□ 0.11
VCPP55072 PRSS30P-206ENST00000641773 873 ntBASIC15.75■□□□□ 0.11
VCPP55072 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC15.75■□□□□ 0.11
VCPP55072 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC15.75■□□□□ 0.11
VCPP55072 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.75■□□□□ 0.11
VCPP55072 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
VCPP55072 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
VCPP55072 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
VCPP55072 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.74■□□□□ 0.11
VCPP55072 GRK6P1-201ENST00000400595 1711 ntBASIC15.74■□□□□ 0.11
VCPP55072 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
VCPP55072 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
VCPP55072 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.74■□□□□ 0.11
VCPP55072 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC15.74■□□□□ 0.11
VCPP55072 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
VCPP55072 ATP2B3-204ENST00000370186 6742 ntTSL 5 BASIC15.74■□□□□ 0.11
VCPP55072 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
VCPP55072 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 APRT-201ENST00000378364 947 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC15.74■□□□□ 0.11
VCPP55072 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
VCPP55072 NDUFAB1P1-201ENST00000404262 460 ntBASIC15.74■□□□□ 0.11
VCPP55072 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC15.74■□□□□ 0.11
VCPP55072 EIF3FP3-201ENST00000434851 1086 ntBASIC15.74■□□□□ 0.11
VCPP55072 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
VCPP55072 RN7SL181P-201ENST00000462921 277 ntBASIC15.74■□□□□ 0.11
VCPP55072 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC15.74■□□□□ 0.11
VCPP55072 LINC01481-204ENST00000550216 494 ntTSL 2 BASIC15.74■□□□□ 0.11
VCPP55072 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC15.74■□□□□ 0.11
VCPP55072 WDR7-208ENST00000589935 544 ntTSL 4 BASIC15.74■□□□□ 0.11
VCPP55072 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.74■□□□□ 0.11
VCPP55072 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC15.74■□□□□ 0.11
VCPP55072 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC15.74■□□□□ 0.11
VCPP55072 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
VCPP55072 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC15.74■□□□□ 0.11
VCPP55072 KRT8P14-201ENST00000414254 1442 ntBASIC15.74■□□□□ 0.11
VCPP55072 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 PES1-204ENST00000402284 2144 ntTSL 5 BASIC15.74■□□□□ 0.11
VCPP55072 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
VCPP55072 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
VCPP55072 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
VCPP55072 LGALS8-203ENST00000341872 2437 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
VCPP55072 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC15.74■□□□□ 0.11
VCPP55072 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms