Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC19.09■□□□□ 0.65
HOXC9P31274 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HOXC9P31274 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HOXC9P31274 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
HOXC9P31274 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HOXC9P31274 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
HOXC9P31274 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
HOXC9P31274 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
HOXC9P31274 TNFRSF1A-202ENST00000366159 1339 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HOXC9P31274 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HOXC9P31274 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HOXC9P31274 GSTT2-201ENST00000402588 937 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HOXC9P31274 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC19.09■□□□□ 0.65
HOXC9P31274 AL157792.1-201ENST00000488281 530 ntBASIC19.09■□□□□ 0.65
HOXC9P31274 DHPS-207ENST00000594424 1172 ntTSL 3 BASIC19.09■□□□□ 0.65
HOXC9P31274 MIR6074-201ENST00000612054 107 ntBASIC19.09■□□□□ 0.65
HOXC9P31274 SRSF3-208ENST00000620941 869 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
HOXC9P31274 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC19.09■□□□□ 0.65
HOXC9P31274 AC002044.2-201ENST00000624910 970 ntBASIC19.09■□□□□ 0.65
HOXC9P31274 SLC12A5-219ENST00000628272 401 ntTSL 3 BASIC19.09■□□□□ 0.65
HOXC9P31274 AL121956.4-201ENST00000629925 581 ntTSL 5 BASIC19.09■□□□□ 0.65
HOXC9P31274 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HOXC9P31274 TAGLN2-203ENST00000368097 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HOXC9P31274 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
HOXC9P31274 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HOXC9P31274 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC19.09■□□□□ 0.65
HOXC9P31274 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HOXC9P31274 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
HOXC9P31274 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.09■□□□□ 0.65
HOXC9P31274 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC19.09■□□□□ 0.65
HOXC9P31274 TACC3-212ENST00000612220 1756 ntTSL 5 BASIC19.09■□□□□ 0.65
HOXC9P31274 AC010255.3-203ENST00000509403 1727 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
HOXC9P31274 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
HOXC9P31274 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
HOXC9P31274 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC19.08■□□□□ 0.65
HOXC9P31274 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
HOXC9P31274 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC19.08■□□□□ 0.65
HOXC9P31274 CST5-201ENST00000304710 756 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
HOXC9P31274 LEMD1-205ENST00000367154 786 ntTSL 2 BASIC19.08■□□□□ 0.64
HOXC9P31274 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC19.08■□□□□ 0.64
HOXC9P31274 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC19.08■□□□□ 0.64
HOXC9P31274 SF3B1-204ENST00000414963 651 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
HOXC9P31274 RN7SL564P-201ENST00000496309 250 ntBASIC19.08■□□□□ 0.64
HOXC9P31274 AC022447.6-201ENST00000515522 438 ntBASIC19.08■□□□□ 0.64
HOXC9P31274 CYB561D1-207ENST00000527072 892 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
HOXC9P31274 KLF17P1-201ENST00000547105 1126 ntBASIC19.08■□□□□ 0.64
HOXC9P31274 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC19.08■□□□□ 0.64
HOXC9P31274 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
HOXC9P31274 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC19.08■□□□□ 0.64
HOXC9P31274 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC19.08■□□□□ 0.64
HOXC9P31274 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.08■□□□□ 0.64
HOXC9P31274 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
HOXC9P31274 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
HOXC9P31274 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
HOXC9P31274 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
HOXC9P31274 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 IL1F10-202ENST00000393197 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC19.07■□□□□ 0.64
HOXC9P31274 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC19.07■□□□□ 0.64
HOXC9P31274 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 GHR-201ENST00000230882 4560 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
HOXC9P31274 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
HOXC9P31274 STK16-203ENST00000409516 895 ntTSL 2 BASIC19.07■□□□□ 0.64
HOXC9P31274 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
HOXC9P31274 AC006987.1-201ENST00000413610 527 ntBASIC19.07■□□□□ 0.64
HOXC9P31274 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC19.07■□□□□ 0.64
HOXC9P31274 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC19.07■□□□□ 0.64
HOXC9P31274 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
HOXC9P31274 AC141586.1-203ENST00000567242 366 ntBASIC19.07■□□□□ 0.64
HOXC9P31274 AC020636.2-201ENST00000569170 1189 ntAPPRIS P5 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 LINC02081-203ENST00000591384 867 ntTSL 3 BASIC19.07■□□□□ 0.64
HOXC9P31274 SLC27A5-204ENST00000594786 643 ntTSL 2 BASIC19.07■□□□□ 0.64
HOXC9P31274 AC006158.1-201ENST00000610661 249 ntBASIC19.07■□□□□ 0.64
HOXC9P31274 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC19.07■□□□□ 0.64
HOXC9P31274 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
HOXC9P31274 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 BTNL8-211ENST00000610640 1488 ntTSL 5 BASIC19.07■□□□□ 0.64
HOXC9P31274 AC025183.3-201ENST00000623526 1482 ntBASIC19.07■□□□□ 0.64
HOXC9P31274 TLE3-203ENST00000451782 2356 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
HOXC9P31274 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC19.07■□□□□ 0.64
HOXC9P31274 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
HOXC9P31274 PPM1L-201ENST00000295839 1449 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC19.07■□□□□ 0.64
HOXC9P31274 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HOXC9P31274 FMR1-215ENST00000616382 1648 ntTSL 5 BASIC19.07■□□□□ 0.64
HOXC9P31274 AC011498.7-201ENST00000624986 2027 ntBASIC19.07■□□□□ 0.64
HOXC9P31274 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
HOXC9P31274 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC19.06■□□□□ 0.64
HOXC9P31274 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms