Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC16.75■□□□□ 0.27
SCN4AP35499 AAAS-202ENST00000394384 1703 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SCN4AP35499 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SCN4AP35499 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC16.75■□□□□ 0.27
SCN4AP35499 PHBP10-201ENST00000416467 784 ntBASIC16.75■□□□□ 0.27
SCN4AP35499 PSME2P2-201ENST00000453033 700 ntBASIC16.75■□□□□ 0.27
SCN4AP35499 AC026786.1-201ENST00000540096 1374 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
SCN4AP35499 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC16.75■□□□□ 0.27
SCN4AP35499 AC104506.1-201ENST00000609247 429 ntBASIC16.75■□□□□ 0.27
SCN4AP35499 AC123912.6-201ENST00000612657 315 ntBASIC16.75■□□□□ 0.27
SCN4AP35499 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.75■□□□□ 0.27
SCN4AP35499 AC005865.2-202ENST00000635814 725 ntBASIC16.75■□□□□ 0.27
SCN4AP35499 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SCN4AP35499 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SCN4AP35499 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.74■□□□□ 0.27
SCN4AP35499 MLF1-217ENST00000619577 2290 ntTSL 5 BASIC16.74■□□□□ 0.27
SCN4AP35499 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SCN4AP35499 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.74■□□□□ 0.27
SCN4AP35499 TMBIM7P-203ENST00000641617 1718 ntBASIC16.74■□□□□ 0.27
SCN4AP35499 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SCN4AP35499 PSMC5-201ENST00000310144 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SCN4AP35499 TBC1D27-202ENST00000424239 1573 ntBASIC16.74■□□□□ 0.27
SCN4AP35499 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SCN4AP35499 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SCN4AP35499 FGF21-202ENST00000593756 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SCN4AP35499 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC16.74■□□□□ 0.27
SCN4AP35499 AC092810.2-201ENST00000431570 362 ntBASIC16.74■□□□□ 0.27
SCN4AP35499 SLC25A15P1-201ENST00000456738 342 ntBASIC16.74■□□□□ 0.27
SCN4AP35499 RPL29P2-201ENST00000488409 460 ntBASIC16.74■□□□□ 0.27
SCN4AP35499 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC16.74■□□□□ 0.27
SCN4AP35499 ETV4-208ENST00000586826 917 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SCN4AP35499 KF455155.1-201ENST00000604493 303 ntBASIC16.74■□□□□ 0.27
SCN4AP35499 AC005609.5-201ENST00000624712 1053 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SCN4AP35499 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.74■□□□□ 0.27
SCN4AP35499 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC16.74■□□□□ 0.27
SCN4AP35499 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SCN4AP35499 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SCN4AP35499 CLUAP1-201ENST00000341633 1643 ntTSL 5 BASIC16.74■□□□□ 0.27
SCN4AP35499 ZMYND15-204ENST00000573751 2409 ntTSL 2 BASIC16.74■□□□□ 0.27
SCN4AP35499 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SCN4AP35499 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
SCN4AP35499 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.73■□□□□ 0.27
SCN4AP35499 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SCN4AP35499 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC16.73■□□□□ 0.27
SCN4AP35499 SFXN4-201ENST00000355697 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SCN4AP35499 DNAAF5-202ENST00000403952 1907 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SCN4AP35499 MRPS28-201ENST00000276585 850 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SCN4AP35499 PCLAF-202ENST00000380258 911 ntTSL 2 BASIC16.73■□□□□ 0.27
SCN4AP35499 RN7SKP212-201ENST00000410851 328 ntBASIC16.73■□□□□ 0.27
SCN4AP35499 SNHG14-201ENST00000414175 610 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SCN4AP35499 Z82185.1-201ENST00000417792 549 ntTSL 4 BASIC16.73■□□□□ 0.27
SCN4AP35499 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC16.73■□□□□ 0.27
SCN4AP35499 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC16.73■□□□□ 0.27
SCN4AP35499 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC16.73■□□□□ 0.27
SCN4AP35499 LINC01444-201ENST00000580867 764 ntTSL 2 BASIC16.73■□□□□ 0.27
SCN4AP35499 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SCN4AP35499 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.73■□□□□ 0.27
SCN4AP35499 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SCN4AP35499 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC16.73■□□□□ 0.27
SCN4AP35499 DUT-208ENST00000559540 1441 ntTSL 2 BASIC16.73■□□□□ 0.27
SCN4AP35499 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC16.73■□□□□ 0.27
SCN4AP35499 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SCN4AP35499 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
SCN4AP35499 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SCN4AP35499 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SCN4AP35499 OR2T8-201ENST00000319968 939 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
SCN4AP35499 GH1-203ENST00000351388 685 ntTSL 2 BASIC16.73■□□□□ 0.27
SCN4AP35499 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SCN4AP35499 MYL4-202ENST00000393450 855 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SCN4AP35499 RPSAP6-201ENST00000417882 882 ntBASIC16.73■□□□□ 0.27
SCN4AP35499 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC16.73■□□□□ 0.27
SCN4AP35499 LINC01875-201ENST00000454477 660 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SCN4AP35499 AC007679.1-201ENST00000458609 502 ntBASIC16.73■□□□□ 0.27
SCN4AP35499 AC022447.5-201ENST00000504817 392 ntBASIC16.73■□□□□ 0.27
SCN4AP35499 COQ10BP2-201ENST00000513804 724 ntBASIC16.73■□□□□ 0.27
SCN4AP35499 AC087442.1-201ENST00000525563 249 ntTSL 2 BASIC16.73■□□□□ 0.27
SCN4AP35499 AC005736.3-201ENST00000571169 244 ntTSL 5 BASIC16.73■□□□□ 0.27
SCN4AP35499 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC16.73■□□□□ 0.27
SCN4AP35499 OR2T8-202ENST00000641945 1226 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
SCN4AP35499 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC16.73■□□□□ 0.27
SCN4AP35499 PRIMPOL-211ENST00000515774 2007 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SCN4AP35499 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SCN4AP35499 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
SCN4AP35499 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC16.72■□□□□ 0.27
SCN4AP35499 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SCN4AP35499 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.72■□□□□ 0.27
SCN4AP35499 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
SCN4AP35499 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SCN4AP35499 RPL13AP3-202ENST00000494676 1473 ntBASIC16.72■□□□□ 0.27
SCN4AP35499 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.72■□□□□ 0.27
SCN4AP35499 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SCN4AP35499 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SCN4AP35499 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.72■□□□□ 0.27
SCN4AP35499 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
SCN4AP35499 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC16.72■□□□□ 0.27
SCN4AP35499 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SCN4AP35499 ELP4-228ENST00000640954 1612 ntTSL 5 BASIC16.72■□□□□ 0.27
SCN4AP35499 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
SCN4AP35499 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.72■□□□□ 0.27
SCN4AP35499 IZUMO1R-201ENST00000328458 798 ntAPPRIS P2 TSL 5 BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms