Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 PLTP-203ENST00000372431 1743 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 AC005562.1-201ENST00000583030 3219 ntBASIC14.55□□□□□ -0.08
COL6A2P12110 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC14.55□□□□□ -0.08
COL6A2P12110 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.55□□□□□ -0.08
COL6A2P12110 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 AC013472.1-203ENST00000380387 1966 ntTSL 4 BASIC14.55□□□□□ -0.08
COL6A2P12110 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
COL6A2P12110 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 SNRPC-202ENST00000374017 1054 ntTSL 2 BASIC14.55□□□□□ -0.08
COL6A2P12110 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
COL6A2P12110 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC14.55□□□□□ -0.08
COL6A2P12110 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.55□□□□□ -0.08
COL6A2P12110 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC14.55□□□□□ -0.08
COL6A2P12110 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.55□□□□□ -0.08
COL6A2P12110 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.55□□□□□ -0.08
COL6A2P12110 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
COL6A2P12110 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 AC023794.5-201ENST00000564380 2157 ntBASIC14.55□□□□□ -0.08
COL6A2P12110 FKBP4P6-201ENST00000457486 1332 ntBASIC14.55□□□□□ -0.08
COL6A2P12110 HNRNPH1-204ENST00000442819 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 NDRG4-255ENST00000570248 3207 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.55□□□□□ -0.08
COL6A2P12110 AP000593.2-201ENST00000542775 1433 ntBASIC14.55□□□□□ -0.08
COL6A2P12110 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
COL6A2P12110 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 RTFDC1-203ENST00000395881 1572 ntTSL 2 BASIC14.55□□□□□ -0.08
COL6A2P12110 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.55□□□□□ -0.08
COL6A2P12110 GGACT-201ENST00000376250 2804 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
COL6A2P12110 EHMT2-201ENST00000375528 4047 ntAPPRIS ALT2 TSL 2 BASIC14.55□□□□□ -0.08
COL6A2P12110 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.55□□□□□ -0.08
COL6A2P12110 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC14.55□□□□□ -0.08
COL6A2P12110 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC14.55□□□□□ -0.08
COL6A2P12110 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
COL6A2P12110 SIRT2-202ENST00000358931 1912 ntTSL 5 BASIC14.54□□□□□ -0.08
COL6A2P12110 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 FAM86B1-203ENST00000448228 2096 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
COL6A2P12110 SHCBP1-201ENST00000303383 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 DSN1-207ENST00000448110 2129 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
COL6A2P12110 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC14.54□□□□□ -0.08
COL6A2P12110 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL6A2P12110 SPOCD1-201ENST00000257100 2472 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
COL6A2P12110 AC130686.1-201ENST00000622936 2466 ntBASIC14.54□□□□□ -0.08
COL6A2P12110 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC14.54□□□□□ -0.08
COL6A2P12110 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC14.54□□□□□ -0.08
COL6A2P12110 NUMB-216ENST00000555394 3037 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC14.54□□□□□ -0.08
COL6A2P12110 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 RASGEF1A-202ENST00000374459 3264 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
COL6A2P12110 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL6A2P12110 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
COL6A2P12110 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.54□□□□□ -0.08
COL6A2P12110 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC14.54□□□□□ -0.08
COL6A2P12110 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.54□□□□□ -0.08
COL6A2P12110 ARSEP1-201ENST00000420443 635 ntBASIC14.54□□□□□ -0.08
COL6A2P12110 SERBP1P5-201ENST00000510079 1181 ntBASIC14.54□□□□□ -0.08
COL6A2P12110 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.54□□□□□ -0.08
COL6A2P12110 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.54□□□□□ -0.08
COL6A2P12110 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC14.54□□□□□ -0.08
COL6A2P12110 PAM16-204ENST00000571941 674 ntTSL 3 BASIC14.54□□□□□ -0.08
COL6A2P12110 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.54□□□□□ -0.08
COL6A2P12110 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.54□□□□□ -0.08
COL6A2P12110 AC064801.2-201ENST00000625052 1303 ntBASIC14.54□□□□□ -0.08
COL6A2P12110 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 CETP-203ENST00000566128 1733 ntTSL 5 BASIC14.54□□□□□ -0.08
COL6A2P12110 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL6A2P12110 ANKRD36BP2-202ENST00000421951 1899 ntTSL 3 BASIC14.54□□□□□ -0.08
COL6A2P12110 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC14.54□□□□□ -0.08
COL6A2P12110 AC020910.5-201ENST00000623668 1865 ntBASIC14.54□□□□□ -0.08
COL6A2P12110 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC14.54□□□□□ -0.08
COL6A2P12110 VRK3-217ENST00000599538 2126 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
COL6A2P12110 TRPV6-201ENST00000359396 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC14.54□□□□□ -0.08
COL6A2P12110 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
COL6A2P12110 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC14.53□□□□□ -0.08
COL6A2P12110 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
COL6A2P12110 LINC00882-204ENST00000484698 2718 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
COL6A2P12110 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
COL6A2P12110 ANKRD42-201ENST00000260047 2514 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms