Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 ZNF417-203ENST00000595559 1975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 AC073869.2-201ENST00000417338 1026 ntBASIC16.28■□□□□ 0.2
VTA1Q9NP79 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 HMGCLL1-208ENST00000508459 884 ntTSL 2 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 NUDT4P2-201ENST00000578341 546 ntBASIC16.28■□□□□ 0.2
VTA1Q9NP79 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 GMFG-209ENST00000600322 622 ntTSL 5 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 AC009975.2-202ENST00000634539 854 ntTSL 5 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 ERG-207ENST00000398919 1868 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 LAP3P2-201ENST00000454686 1454 ntBASIC16.28■□□□□ 0.2
VTA1Q9NP79 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
VTA1Q9NP79 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
VTA1Q9NP79 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.2
VTA1Q9NP79 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VTA1Q9NP79 RAB37-216ENST00000613645 1653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VTA1Q9NP79 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VTA1Q9NP79 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VTA1Q9NP79 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.27■□□□□ 0.2
VTA1Q9NP79 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VTA1Q9NP79 METAP2-205ENST00000546753 1862 ntTSL 2 BASIC16.27■□□□□ 0.2
VTA1Q9NP79 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC16.27■□□□□ 0.2
VTA1Q9NP79 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VTA1Q9NP79 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VTA1Q9NP79 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.27■□□□□ 0.2
VTA1Q9NP79 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VTA1Q9NP79 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VTA1Q9NP79 HLA-DMA-203ENST00000395305 777 ntBASIC16.27■□□□□ 0.2
VTA1Q9NP79 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VTA1Q9NP79 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
VTA1Q9NP79 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC16.27■□□□□ 0.2
VTA1Q9NP79 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
VTA1Q9NP79 MT3-203ENST00000565838 421 ntTSL 3 BASIC16.27■□□□□ 0.2
VTA1Q9NP79 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC16.27■□□□□ 0.2
VTA1Q9NP79 HIST1H4I-201ENST00000615353 1294 ntAPPRIS P1 BASIC16.27■□□□□ 0.2
VTA1Q9NP79 MIR6858-201ENST00000620733 67 ntBASIC16.27■□□□□ 0.2
VTA1Q9NP79 AC005618.3-201ENST00000624928 458 ntBASIC16.27■□□□□ 0.2
VTA1Q9NP79 AC021683.1-201ENST00000585798 1767 ntTSL 5 BASIC16.27■□□□□ 0.2
VTA1Q9NP79 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
VTA1Q9NP79 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VTA1Q9NP79 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.27■□□□□ 0.19
VTA1Q9NP79 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16.27■□□□□ 0.19
VTA1Q9NP79 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VTA1Q9NP79 AC073347.1-201ENST00000421633 2643 ntBASIC16.27■□□□□ 0.19
VTA1Q9NP79 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VTA1Q9NP79 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.27■□□□□ 0.19
VTA1Q9NP79 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
VTA1Q9NP79 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
VTA1Q9NP79 SNX2-201ENST00000379516 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VTA1Q9NP79 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VTA1Q9NP79 GMEB1-202ENST00000361872 1894 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VTA1Q9NP79 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VTA1Q9NP79 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
VTA1Q9NP79 GPX3-201ENST00000388825 1636 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
VTA1Q9NP79 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VTA1Q9NP79 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
VTA1Q9NP79 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VTA1Q9NP79 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VTA1Q9NP79 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VTA1Q9NP79 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VTA1Q9NP79 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VTA1Q9NP79 PPT1-205ENST00000449045 1957 ntTSL 2 BASIC16.26■□□□□ 0.19
VTA1Q9NP79 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC16.26■□□□□ 0.19
VTA1Q9NP79 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VTA1Q9NP79 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
VTA1Q9NP79 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VTA1Q9NP79 FOLR1-202ENST00000393676 996 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
VTA1Q9NP79 HIST2H2BA-201ENST00000412169 381 ntBASIC16.26■□□□□ 0.19
VTA1Q9NP79 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
VTA1Q9NP79 AL512306.1-201ENST00000432698 848 ntBASIC16.26■□□□□ 0.19
VTA1Q9NP79 AL157788.1-201ENST00000437838 229 ntTSL 3 BASIC16.26■□□□□ 0.19
VTA1Q9NP79 AC018463.1-201ENST00000456674 917 ntBASIC16.26■□□□□ 0.19
VTA1Q9NP79 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
VTA1Q9NP79 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC16.26■□□□□ 0.19
VTA1Q9NP79 RN7SL818P-201ENST00000485099 259 ntBASIC16.26■□□□□ 0.19
VTA1Q9NP79 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC16.26■□□□□ 0.19
VTA1Q9NP79 IGHV3-37-201ENST00000518544 340 ntBASIC16.26■□□□□ 0.19
VTA1Q9NP79 TMCO5B-205ENST00000530020 894 ntBASIC16.26■□□□□ 0.19
VTA1Q9NP79 TMEM14C-205ENST00000541412 1177 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
VTA1Q9NP79 AC138701.2-201ENST00000553634 226 ntBASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms