Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
USP28Q96RU2 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC16.8■□□□□ 0.28
USP28Q96RU2 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 PRKCSH-212ENST00000591462 2209 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
USP28Q96RU2 AL021395.1-201ENST00000611791 2232 ntTSL 5 BASIC16.8■□□□□ 0.28
USP28Q96RU2 DMRT2-202ENST00000302441 1495 ntTSL 5 BASIC16.8■□□□□ 0.28
USP28Q96RU2 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
USP28Q96RU2 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC16.8■□□□□ 0.28
USP28Q96RU2 AC027288.3-202ENST00000550268 1820 ntTSL 2 BASIC16.8■□□□□ 0.28
USP28Q96RU2 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
USP28Q96RU2 GDAP1L1-206ENST00000537864 2855 ntTSL 2 BASIC16.79■□□□□ 0.28
USP28Q96RU2 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
USP28Q96RU2 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP28Q96RU2 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP28Q96RU2 CLIP2-203ENST00000395060 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP28Q96RU2 AGAP10P-201ENST00000454844 2418 ntBASIC16.79■□□□□ 0.28
USP28Q96RU2 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP28Q96RU2 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC16.79■□□□□ 0.28
USP28Q96RU2 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP28Q96RU2 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP28Q96RU2 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP28Q96RU2 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
USP28Q96RU2 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP28Q96RU2 TMBIM6-203ENST00000423828 3254 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
USP28Q96RU2 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP28Q96RU2 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC16.79■□□□□ 0.28
USP28Q96RU2 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC16.79■□□□□ 0.28
USP28Q96RU2 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP28Q96RU2 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP28Q96RU2 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
USP28Q96RU2 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.79■□□□□ 0.28
USP28Q96RU2 USP32P1-208ENST00000506594 1164 ntBASIC16.79■□□□□ 0.28
USP28Q96RU2 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.79■□□□□ 0.28
USP28Q96RU2 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC16.79■□□□□ 0.28
USP28Q96RU2 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.79■□□□□ 0.28
USP28Q96RU2 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC16.79■□□□□ 0.28
USP28Q96RU2 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC16.79■□□□□ 0.28
USP28Q96RU2 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC16.79■□□□□ 0.28
USP28Q96RU2 FKBP9-214ENST00000538336 3621 ntTSL 2 BASIC16.79■□□□□ 0.28
USP28Q96RU2 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP28Q96RU2 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
USP28Q96RU2 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
USP28Q96RU2 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
USP28Q96RU2 VDAC1-201ENST00000265333 1953 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
USP28Q96RU2 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USP28Q96RU2 ST20-AS1-201ENST00000560255 4223 ntBASIC16.78■□□□□ 0.28
USP28Q96RU2 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP28Q96RU2 LCMT1-203ENST00000399069 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP28Q96RU2 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
USP28Q96RU2 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC16.78■□□□□ 0.28
USP28Q96RU2 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP28Q96RU2 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP28Q96RU2 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
USP28Q96RU2 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
USP28Q96RU2 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC16.78■□□□□ 0.28
USP28Q96RU2 DAZL-201ENST00000250863 3104 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USP28Q96RU2 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP28Q96RU2 ZBTB12BP-201ENST00000314232 1122 ntBASIC16.78■□□□□ 0.28
USP28Q96RU2 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USP28Q96RU2 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.78■□□□□ 0.28
USP28Q96RU2 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
USP28Q96RU2 ARSEP1-201ENST00000420443 635 ntBASIC16.78■□□□□ 0.28
USP28Q96RU2 FAM197Y7-201ENST00000432892 766 ntBASIC16.78■□□□□ 0.28
USP28Q96RU2 AL355864.2-201ENST00000447420 863 ntBASIC16.78■□□□□ 0.28
USP28Q96RU2 MAATS1-203ENST00000463700 939 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
USP28Q96RU2 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC16.78■□□□□ 0.28
USP28Q96RU2 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC16.78■□□□□ 0.28
USP28Q96RU2 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.78■□□□□ 0.28
USP28Q96RU2 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.78■□□□□ 0.28
USP28Q96RU2 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC16.78■□□□□ 0.28
USP28Q96RU2 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP28Q96RU2 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
USP28Q96RU2 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
USP28Q96RU2 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP28Q96RU2 NIN-202ENST00000324330 4364 ntTSL 5 BASIC16.78■□□□□ 0.28
USP28Q96RU2 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP28Q96RU2 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP28Q96RU2 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
USP28Q96RU2 GK-204ENST00000378945 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP28Q96RU2 BAX-201ENST00000293288 1358 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
USP28Q96RU2 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP28Q96RU2 POTEM-201ENST00000547889 1817 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP28Q96RU2 NOX5-209ENST00000530406 2289 ntAPPRIS P4 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP28Q96RU2 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
USP28Q96RU2 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
USP28Q96RU2 RNF41-202ENST00000394013 2452 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
USP28Q96RU2 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC16.77■□□□□ 0.28
USP28Q96RU2 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP28Q96RU2 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP28Q96RU2 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC16.77■□□□□ 0.28
USP28Q96RU2 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP28Q96RU2 AC097376.2-205ENST00000610159 5334 ntBASIC16.77■□□□□ 0.28
USP28Q96RU2 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
USP28Q96RU2 AC005229.1-201ENST00000392885 409 ntBASIC16.77■□□□□ 0.28
USP28Q96RU2 TMEM14DP-201ENST00000422205 345 ntBASIC16.77■□□□□ 0.28
USP28Q96RU2 BCRP2-202ENST00000447763 634 ntBASIC16.77■□□□□ 0.28
USP28Q96RU2 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.77■□□□□ 0.28
USP28Q96RU2 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms