Protein–RNA interactions for Protein: Q96P16

RPRD1A, Regulation of nuclear pre-mRNA domain-containing protein 1A, humanhuman

Predicted RBP Predictions only

Length 312 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPRD1AQ96P16 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
RPRD1AQ96P16 AL008718.2-201ENST00000609206 1313 ntBASIC15.16■□□□□ 0.02
RPRD1AQ96P16 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC15.16■□□□□ 0.02
RPRD1AQ96P16 CDK16-211ENST00000518022 2022 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
RPRD1AQ96P16 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RPRD1AQ96P16 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 AC113367.3-201ENST00000508316 1912 ntBASIC15.15■□□□□ 0.02
RPRD1AQ96P16 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 AGGF1P1-201ENST00000509500 2073 ntBASIC15.15■□□□□ 0.02
RPRD1AQ96P16 TNFRSF10C-201ENST00000356864 1718 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 HNRNPA1P32-201ENST00000396326 963 ntBASIC15.15■□□□□ 0.02
RPRD1AQ96P16 HNRNPA1P27-201ENST00000412087 955 ntBASIC15.15■□□□□ 0.02
RPRD1AQ96P16 KLF2P1-201ENST00000447438 1042 ntBASIC15.15■□□□□ 0.02
RPRD1AQ96P16 AC004898.1-201ENST00000451057 766 ntBASIC15.15■□□□□ 0.02
RPRD1AQ96P16 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 AC022447.6-201ENST00000515522 438 ntBASIC15.15■□□□□ 0.02
RPRD1AQ96P16 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 AP001258.2-201ENST00000529891 490 ntBASIC15.15■□□□□ 0.02
RPRD1AQ96P16 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 AC009884.2-201ENST00000603110 324 ntBASIC15.15■□□□□ 0.02
RPRD1AQ96P16 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 ARMCX6-207ENST00000538627 1758 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 CHRD-206ENST00000450923 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 AL390755.1-201ENST00000623716 2027 ntBASIC15.15■□□□□ 0.02
RPRD1AQ96P16 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 ALDH8A1-204ENST00000367847 1587 ntTSL 2 BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 KLHDC7A-201ENST00000400664 5145 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RPRD1AQ96P16 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 RANBP1-208ENST00000430524 1389 ntTSL 3 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 KHSRPP1-201ENST00000427983 1768 ntBASIC15.14■□□□□ 0.01
RPRD1AQ96P16 CSTB-201ENST00000291568 2164 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 C4B-AS1-205ENST00000415626 2095 ntTSL 2 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 C4A-AS1-204ENST00000458633 2095 ntTSL 2 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 OARD1-212ENST00000482515 832 ntTSL 2 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 NKG7-204ENST00000595217 816 ntTSL 2 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 STOML1-206ENST00000561656 1833 ntTSL 3 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 TXNDC5-204ENST00000473453 1301 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RPRD1AQ96P16 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 64.3 ms