Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.23
NUP54Q7Z3B4 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 AC015818.8-201ENST00000587907 1519 ntBASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 AL023775.1-201ENST00000454907 1746 ntBASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 SH3KBP1-201ENST00000379697 1944 ntTSL 5 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 AC005912.2-201ENST00000619492 2400 ntBASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 AC009093.2-202ENST00000620513 2079 ntBASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 CAND2-201ENST00000295989 4429 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 Z93015.1-201ENST00000451718 390 ntBASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 NAPSB-201ENST00000525179 678 ntTSL 3 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 AL358472.3-201ENST00000608147 415 ntBASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 AL136301.1-201ENST00000615830 422 ntBASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 AC015802.1-201ENST00000588104 1449 ntBASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 MTHFR-210ENST00000641407 2387 ntBASIC13.64□□□□□ -0.23
NUP54Q7Z3B4 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 SLC8B1-202ENST00000546737 1656 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 NUP54-217ENST00000514987 1563 ntTSL 2 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 RPF1-202ENST00000370656 724 ntTSL 2 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 OLR1-203ENST00000432556 950 ntTSL 2 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 PUDPP3-201ENST00000445368 636 ntBASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 HIST2H2BB-201ENST00000449108 381 ntBASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 PAX5-211ENST00000522003 1019 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 ACR-203ENST00000529621 708 ntTSL 5 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 AC009542.2-202ENST00000619004 1067 ntBASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 ARAP3-201ENST00000239440 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
NUP54Q7Z3B4 PRMT7-203ENST00000449359 2091 ntTSL 2 BASIC13.63□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms