Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 MYADML-201ENST00000474610 2147 ntBASIC18.1■□□□□ 0.49
RC3H1Q5TC82 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC18.1■□□□□ 0.49
RC3H1Q5TC82 ELF3-202ENST00000367283 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RC3H1Q5TC82 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RC3H1Q5TC82 MX1-218ENST00000619682 1980 ntTSL 5 BASIC18.1■□□□□ 0.49
RC3H1Q5TC82 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RC3H1Q5TC82 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
RC3H1Q5TC82 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 BCAT2-201ENST00000316273 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 WDSUB1-201ENST00000358147 1535 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 FAM96A-203ENST00000557835 1536 ntTSL 2 BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 AL109809.1-201ENST00000418979 1367 ntBASIC18.09■□□□□ 0.49
RC3H1Q5TC82 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 OPN1MW2-201ENST00000369929 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 PSAT1P2-201ENST00000426107 972 ntBASIC18.09■□□□□ 0.49
RC3H1Q5TC82 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 AC092573.1-201ENST00000433054 884 ntBASIC18.09■□□□□ 0.49
RC3H1Q5TC82 APCDD1L-AS1-206ENST00000445984 566 ntTSL 3 BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 APCDD1L-AS1-208ENST00000448374 546 ntTSL 4 BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 AL096772.1-201ENST00000451135 781 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 AL451000.1-201ENST00000451300 1186 ntBASIC18.09■□□□□ 0.49
RC3H1Q5TC82 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 AC105219.2-201ENST00000527908 299 ntTSL 4 BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 AC092862.1-201ENST00000541534 533 ntBASIC18.09■□□□□ 0.49
RC3H1Q5TC82 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 ABHD17AP9-201ENST00000561925 548 ntBASIC18.09■□□□□ 0.49
RC3H1Q5TC82 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
RC3H1Q5TC82 FAM103A1-201ENST00000304191 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RC3H1Q5TC82 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RC3H1Q5TC82 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RC3H1Q5TC82 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.49
RC3H1Q5TC82 VAC14-AS1-201ENST00000398177 2145 ntTSL 2 BASIC18.08■□□□□ 0.49
RC3H1Q5TC82 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
RC3H1Q5TC82 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
RC3H1Q5TC82 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
RC3H1Q5TC82 RPL13AP3-202ENST00000494676 1473 ntBASIC18.08■□□□□ 0.49
RC3H1Q5TC82 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
RC3H1Q5TC82 GDAP1L1-207ENST00000612599 2585 ntTSL 3 BASIC18.08■□□□□ 0.49
RC3H1Q5TC82 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RC3H1Q5TC82 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC18.08■□□□□ 0.49
RC3H1Q5TC82 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
RC3H1Q5TC82 ANXA5-202ENST00000501272 1363 ntTSL 5 BASIC18.08■□□□□ 0.49
RC3H1Q5TC82 LINC00115-201ENST00000473798 1317 ntBASIC18.08■□□□□ 0.49
RC3H1Q5TC82 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC18.08■□□□□ 0.49
RC3H1Q5TC82 VIPAS39-208ENST00000556412 1832 ntTSL 2 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 AP000354.1-201ENST00000396982 456 ntBASIC18.08■□□□□ 0.48
RC3H1Q5TC82 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 TBC1D8-202ENST00000409318 3803 ntTSL 5 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 EMP1-203ENST00000431267 1039 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 IFI35-204ENST00000438323 1232 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 AC025186.1-201ENST00000478174 870 ntBASIC18.08■□□□□ 0.48
RC3H1Q5TC82 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 RBM4-207ENST00000506523 654 ntTSL 3 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 ANO3-205ENST00000531646 1264 ntTSL 4 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 AL132994.1-201ENST00000554098 400 ntBASIC18.08■□□□□ 0.48
RC3H1Q5TC82 AC012174.1-201ENST00000562349 714 ntTSL 3 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 ARL17B-203ENST00000570618 1140 ntTSL 2 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 RN7SL455P-201ENST00000580629 282 ntBASIC18.08■□□□□ 0.48
RC3H1Q5TC82 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 COQ4-204ENST00000608951 781 ntTSL 2 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 AC138035.3-201ENST00000622706 2791 ntBASIC18.08■□□□□ 0.48
RC3H1Q5TC82 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 OR3A2-205ENST00000641164 2033 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
RC3H1Q5TC82 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms