Protein–RNA interactions for Protein: P55289

CDH12, Cadherin-12, humanhuman

Predictions only

Length 794 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH12P55289 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC13.78□□□□□ -0.2
CDH12P55289 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC13.78□□□□□ -0.2
CDH12P55289 AC009118.2-201ENST00000613275 655 ntBASIC13.78□□□□□ -0.2
CDH12P55289 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC13.78□□□□□ -0.2
CDH12P55289 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC13.78□□□□□ -0.2
CDH12P55289 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDH12P55289 TDG-209ENST00000544861 1387 ntTSL 2 BASIC13.78□□□□□ -0.2
CDH12P55289 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH12P55289 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH12P55289 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH12P55289 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC13.78□□□□□ -0.2
CDH12P55289 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
CDH12P55289 TRMT11-201ENST00000334379 1565 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH12P55289 ELN-210ENST00000380584 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH12P55289 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH12P55289 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC13.78□□□□□ -0.2
CDH12P55289 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.78□□□□□ -0.2
CDH12P55289 DHRS4-AS1-204ENST00000555045 1848 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDH12P55289 CARMIL2-202ENST00000545661 4119 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH12P55289 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
CDH12P55289 AGPAT1-205ENST00000395497 2168 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
CDH12P55289 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
CDH12P55289 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH12P55289 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDH12P55289 FHOD3-201ENST00000257209 4967 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
CDH12P55289 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
CDH12P55289 EPHA5-204ENST00000511294 5176 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CDH12P55289 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CDH12P55289 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.2
CDH12P55289 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC13.77□□□□□ -0.2
CDH12P55289 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
CDH12P55289 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC13.77□□□□□ -0.2
CDH12P55289 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
CDH12P55289 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CDH12P55289 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC13.77□□□□□ -0.2
CDH12P55289 PHACTR2-202ENST00000367582 4367 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CDH12P55289 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CDH12P55289 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
CDH12P55289 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.2
CDH12P55289 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH12P55289 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CDH12P55289 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH12P55289 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CDH12P55289 EPS8L3-202ENST00000361965 1971 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH12P55289 NPR1-202ENST00000368680 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH12P55289 BRF1-202ENST00000379932 884 ntTSL 5 BASIC13.77□□□□□ -0.21
CDH12P55289 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
CDH12P55289 CES1-203ENST00000422046 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH12P55289 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC13.77□□□□□ -0.21
CDH12P55289 AL442647.2-201ENST00000429864 857 ntBASIC13.77□□□□□ -0.21
CDH12P55289 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC13.77□□□□□ -0.21
CDH12P55289 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.77□□□□□ -0.21
CDH12P55289 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH12P55289 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC13.77□□□□□ -0.21
CDH12P55289 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
CDH12P55289 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC13.77□□□□□ -0.21
CDH12P55289 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC13.77□□□□□ -0.21
CDH12P55289 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CDH12P55289 AC092552.1-201ENST00000547243 906 ntBASIC13.77□□□□□ -0.21
CDH12P55289 AC123567.1-201ENST00000548294 1261 ntBASIC13.77□□□□□ -0.21
CDH12P55289 AL359711.2-201ENST00000563105 872 ntBASIC13.77□□□□□ -0.21
CDH12P55289 DUX4L47-201ENST00000566374 394 ntBASIC13.77□□□□□ -0.21
CDH12P55289 AC124283.3-201ENST00000570869 594 ntBASIC13.77□□□□□ -0.21
CDH12P55289 IFT20-206ENST00000578122 834 ntTSL 2 BASIC13.77□□□□□ -0.21
CDH12P55289 IFT20-208ENST00000578985 831 ntTSL 3 BASIC13.77□□□□□ -0.21
CDH12P55289 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CDH12P55289 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CDH12P55289 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC13.77□□□□□ -0.21
CDH12P55289 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.77□□□□□ -0.21
CDH12P55289 CSF2RB-202ENST00000403662 4863 ntAPPRIS P2 TSL 5 BASIC13.77□□□□□ -0.21
CDH12P55289 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
CDH12P55289 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH12P55289 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
CDH12P55289 INPP5E-201ENST00000371712 3394 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH12P55289 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
CDH12P55289 GSN-209ENST00000449733 2702 ntTSL 2 BASIC13.77□□□□□ -0.21
CDH12P55289 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
CDH12P55289 OCRL-202ENST00000371113 5162 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
CDH12P55289 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 AP001062.1-201ENST00000448927 4354 ntTSL 2 BASIC13.76□□□□□ -0.21
CDH12P55289 MYADML-201ENST00000474610 2147 ntBASIC13.76□□□□□ -0.21
CDH12P55289 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC13.76□□□□□ -0.21
CDH12P55289 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 PKM-220ENST00000568459 1806 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 BBS1-202ENST00000393994 1790 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 ZNF747-202ENST00000395094 3504 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 INSC-208ENST00000530161 1702 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 CD6-201ENST00000313421 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 TCAM1P-207ENST00000485295 1537 ntBASIC13.76□□□□□ -0.21
CDH12P55289 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC13.76□□□□□ -0.21
CDH12P55289 ADAMTS13-202ENST00000356589 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
CDH12P55289 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms