Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC13.93□□□□□ -0.18
RFX3P48380 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 RAB37-206ENST00000392615 2655 ntTSL 3 BASIC13.93□□□□□ -0.18
RFX3P48380 NFATC2-202ENST00000396009 7437 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
RFX3P48380 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
RFX3P48380 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
RFX3P48380 PER3-208ENST00000613533 6318 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
RFX3P48380 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
RFX3P48380 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC13.92□□□□□ -0.18
RFX3P48380 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.92□□□□□ -0.18
RFX3P48380 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC13.92□□□□□ -0.18
RFX3P48380 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 NPC1-201ENST00000269228 5157 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.92□□□□□ -0.18
RFX3P48380 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC13.92□□□□□ -0.18
RFX3P48380 SEC14L5-201ENST00000251170 6459 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 CACNA2D2-204ENST00000424201 5206 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 FAM30A-205ENST00000630242 9612 ntTSL 2 BASIC13.92□□□□□ -0.18
RFX3P48380 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC13.92□□□□□ -0.18
RFX3P48380 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC13.92□□□□□ -0.18
RFX3P48380 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC13.92□□□□□ -0.18
RFX3P48380 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC13.92□□□□□ -0.18
RFX3P48380 COX5BP8-201ENST00000416911 349 ntBASIC13.92□□□□□ -0.18
RFX3P48380 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC13.92□□□□□ -0.18
RFX3P48380 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC13.92□□□□□ -0.18
RFX3P48380 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC13.92□□□□□ -0.18
RFX3P48380 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC13.92□□□□□ -0.18
RFX3P48380 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.92□□□□□ -0.18
RFX3P48380 AP001889.1-201ENST00000525414 633 ntBASIC13.92□□□□□ -0.18
RFX3P48380 SLC25A47P1-201ENST00000531577 414 ntBASIC13.92□□□□□ -0.18
RFX3P48380 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC13.92□□□□□ -0.18
RFX3P48380 DUX4L47-201ENST00000566374 394 ntBASIC13.92□□□□□ -0.18
RFX3P48380 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
RFX3P48380 AC004466.1-201ENST00000599515 1080 ntBASIC13.92□□□□□ -0.18
RFX3P48380 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC13.92□□□□□ -0.18
RFX3P48380 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
RFX3P48380 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC13.92□□□□□ -0.18
RFX3P48380 CAMK2B-206ENST00000353625 1624 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 TRIB2-201ENST00000155926 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.92□□□□□ -0.18
RFX3P48380 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 OS9-204ENST00000389146 2091 ntTSL 2 BASIC13.92□□□□□ -0.18
RFX3P48380 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC13.92□□□□□ -0.18
RFX3P48380 AC041040.2-201ENST00000622926 2899 ntBASIC13.92□□□□□ -0.18
RFX3P48380 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
RFX3P48380 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
RFX3P48380 CIAPIN1-213ENST00000569370 1559 ntTSL 3 BASIC13.92□□□□□ -0.18
RFX3P48380 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
RFX3P48380 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC13.91□□□□□ -0.18
RFX3P48380 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
RFX3P48380 AC005840.4-201ENST00000541242 2494 ntBASIC13.91□□□□□ -0.18
RFX3P48380 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.91□□□□□ -0.18
RFX3P48380 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.91□□□□□ -0.18
RFX3P48380 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC13.91□□□□□ -0.18
RFX3P48380 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 SALL4P5-201ENST00000419001 1760 ntBASIC13.91□□□□□ -0.18
RFX3P48380 MUC1-223ENST00000611571 4170 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
RFX3P48380 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
RFX3P48380 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
RFX3P48380 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
RFX3P48380 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
RFX3P48380 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
RFX3P48380 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC13.91□□□□□ -0.18
RFX3P48380 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC13.91□□□□□ -0.18
RFX3P48380 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC13.91□□□□□ -0.18
RFX3P48380 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
RFX3P48380 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC13.91□□□□□ -0.18
RFX3P48380 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC13.91□□□□□ -0.18
RFX3P48380 C2orf27AP3-201ENST00000434123 579 ntBASIC13.91□□□□□ -0.18
RFX3P48380 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
RFX3P48380 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC13.91□□□□□ -0.18
RFX3P48380 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC13.91□□□□□ -0.18
RFX3P48380 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC13.91□□□□□ -0.18
RFX3P48380 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC13.91□□□□□ -0.18
RFX3P48380 AC015936.2-201ENST00000593177 259 ntBASIC13.91□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms