Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA2Q9Y261 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXA2Q9Y261 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA2Q9Y261 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA2Q9Y261 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA2Q9Y261 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC18.39■□□□□ 0.53
FOXA2Q9Y261 THA1P-201ENST00000590384 1145 ntBASIC18.39■□□□□ 0.53
FOXA2Q9Y261 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC18.39■□□□□ 0.53
FOXA2Q9Y261 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC18.39■□□□□ 0.53
FOXA2Q9Y261 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC18.39■□□□□ 0.53
FOXA2Q9Y261 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXA2Q9Y261 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 RARRES2P1-201ENST00000474487 481 ntBASIC18.38■□□□□ 0.53
FOXA2Q9Y261 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC18.38■□□□□ 0.53
FOXA2Q9Y261 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA2Q9Y261 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC18.37■□□□□ 0.53
FOXA2Q9Y261 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
FOXA2Q9Y261 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC18.37■□□□□ 0.53
FOXA2Q9Y261 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA2Q9Y261 KRT18P24-201ENST00000344739 1156 ntBASIC18.37■□□□□ 0.53
FOXA2Q9Y261 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
FOXA2Q9Y261 AC120024.1-201ENST00000562672 995 ntBASIC18.37■□□□□ 0.53
FOXA2Q9Y261 AC103724.3-201ENST00000564481 992 ntBASIC18.37■□□□□ 0.53
FOXA2Q9Y261 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA2Q9Y261 EI24-213ENST00000618552 1747 ntTSL 5 BASIC18.37■□□□□ 0.53
FOXA2Q9Y261 ANOS2P-203ENST00000472227 1816 ntBASIC18.37■□□□□ 0.53
FOXA2Q9Y261 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC18.37■□□□□ 0.53
FOXA2Q9Y261 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA2Q9Y261 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA2Q9Y261 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXA2Q9Y261 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC18.36■□□□□ 0.53
FOXA2Q9Y261 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA2Q9Y261 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA2Q9Y261 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA2Q9Y261 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC18.36■□□□□ 0.53
FOXA2Q9Y261 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC18.36■□□□□ 0.53
FOXA2Q9Y261 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC18.36■□□□□ 0.53
FOXA2Q9Y261 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC18.36■□□□□ 0.53
FOXA2Q9Y261 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FOXA2Q9Y261 AL031848.2-201ENST00000607670 837 ntBASIC18.36■□□□□ 0.53
FOXA2Q9Y261 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC18.36■□□□□ 0.53
FOXA2Q9Y261 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
FOXA2Q9Y261 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA2Q9Y261 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA2Q9Y261 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC18.35■□□□□ 0.53
FOXA2Q9Y261 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA2Q9Y261 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC18.35■□□□□ 0.53
FOXA2Q9Y261 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA2Q9Y261 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA2Q9Y261 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA2Q9Y261 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXA2Q9Y261 AC092068.2-201ENST00000590491 1708 ntBASIC18.35■□□□□ 0.53
FOXA2Q9Y261 AL022069.1-201ENST00000568025 1636 ntBASIC18.34■□□□□ 0.53
FOXA2Q9Y261 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
FOXA2Q9Y261 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA2Q9Y261 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA2Q9Y261 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA2Q9Y261 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA2Q9Y261 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18.34■□□□□ 0.53
FOXA2Q9Y261 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC18.34■□□□□ 0.53
FOXA2Q9Y261 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC18.34■□□□□ 0.53
FOXA2Q9Y261 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA2Q9Y261 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA2Q9Y261 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.34■□□□□ 0.53
FOXA2Q9Y261 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
FOXA2Q9Y261 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
FOXA2Q9Y261 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
FOXA2Q9Y261 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXA2Q9Y261 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
FOXA2Q9Y261 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC18.33■□□□□ 0.53
FOXA2Q9Y261 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
FOXA2Q9Y261 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA2Q9Y261 C9orf163-202ENST00000624034 2573 ntBASIC18.33■□□□□ 0.52
FOXA2Q9Y261 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC18.33■□□□□ 0.52
FOXA2Q9Y261 GAK-223ENST00000628912 497 ntTSL 5 BASIC18.33■□□□□ 0.52
FOXA2Q9Y261 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC18.33■□□□□ 0.52
FOXA2Q9Y261 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC18.33■□□□□ 0.52
FOXA2Q9Y261 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
FOXA2Q9Y261 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA2Q9Y261 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA2Q9Y261 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA2Q9Y261 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXA2Q9Y261 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 16.9 ms