Protein–RNA interactions for Protein: Q8TB33

LINC01560, Putative uncharacterized protein encoded by LINC01560, humanhuman

Predictions only

Length 94 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01560Q8TB33 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
LINC01560Q8TB33 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LINC01560Q8TB33 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
LINC01560Q8TB33 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
LINC01560Q8TB33 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LINC01560Q8TB33 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.83■□□□□ 0.77
LINC01560Q8TB33 AC006455.2-201ENST00000429931 906 ntBASIC19.83■□□□□ 0.77
LINC01560Q8TB33 AC027682.1-201ENST00000562846 899 ntBASIC19.83■□□□□ 0.77
LINC01560Q8TB33 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.83■□□□□ 0.77
LINC01560Q8TB33 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.83■□□□□ 0.76
LINC01560Q8TB33 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
LINC01560Q8TB33 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
LINC01560Q8TB33 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.82■□□□□ 0.76
LINC01560Q8TB33 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
LINC01560Q8TB33 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LINC01560Q8TB33 AC099791.1-201ENST00000416440 715 ntBASIC19.82■□□□□ 0.76
LINC01560Q8TB33 AC104564.3-201ENST00000582367 638 ntBASIC19.82■□□□□ 0.76
LINC01560Q8TB33 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LINC01560Q8TB33 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
LINC01560Q8TB33 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
LINC01560Q8TB33 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC19.82■□□□□ 0.76
LINC01560Q8TB33 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC19.81■□□□□ 0.76
LINC01560Q8TB33 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
LINC01560Q8TB33 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.81■□□□□ 0.76
LINC01560Q8TB33 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LINC01560Q8TB33 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
LINC01560Q8TB33 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LINC01560Q8TB33 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC19.81■□□□□ 0.76
LINC01560Q8TB33 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC19.81■□□□□ 0.76
LINC01560Q8TB33 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.81■□□□□ 0.76
LINC01560Q8TB33 AC241377.3-202ENST00000626088 1088 ntBASIC19.81■□□□□ 0.76
LINC01560Q8TB33 AC241585.3-202ENST00000628937 1088 ntBASIC19.81■□□□□ 0.76
LINC01560Q8TB33 AC245100.8-202ENST00000629247 1058 ntBASIC19.81■□□□□ 0.76
LINC01560Q8TB33 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LINC01560Q8TB33 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LINC01560Q8TB33 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LINC01560Q8TB33 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
LINC01560Q8TB33 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
LINC01560Q8TB33 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC19.8■□□□□ 0.76
LINC01560Q8TB33 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LINC01560Q8TB33 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC19.8■□□□□ 0.76
LINC01560Q8TB33 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LINC01560Q8TB33 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LINC01560Q8TB33 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.8■□□□□ 0.76
LINC01560Q8TB33 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC19.8■□□□□ 0.76
LINC01560Q8TB33 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
LINC01560Q8TB33 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
LINC01560Q8TB33 HLA-L-211ENST00000482052 1765 ntBASIC19.8■□□□□ 0.76
LINC01560Q8TB33 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC19.8■□□□□ 0.76
LINC01560Q8TB33 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
LINC01560Q8TB33 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC19.79■□□□□ 0.76
LINC01560Q8TB33 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.79■□□□□ 0.76
LINC01560Q8TB33 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LINC01560Q8TB33 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LINC01560Q8TB33 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LINC01560Q8TB33 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LINC01560Q8TB33 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
LINC01560Q8TB33 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.79■□□□□ 0.76
LINC01560Q8TB33 MIR6821-201ENST00000617625 74 ntBASIC19.79■□□□□ 0.76
LINC01560Q8TB33 ANKRD20A6P-201ENST00000618763 204 ntBASIC19.79■□□□□ 0.76
LINC01560Q8TB33 AC009086.3-201ENST00000623486 1008 ntBASIC19.79■□□□□ 0.76
LINC01560Q8TB33 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
LINC01560Q8TB33 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
LINC01560Q8TB33 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
LINC01560Q8TB33 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 USF2-207ENST00000595068 1612 ntTSL 5 BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 IRS3P-201ENST00000223076 1006 ntBASIC19.78■□□□□ 0.76
LINC01560Q8TB33 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
LINC01560Q8TB33 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.77■□□□□ 0.76
LINC01560Q8TB33 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC19.77■□□□□ 0.76
LINC01560Q8TB33 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC19.77■□□□□ 0.76
LINC01560Q8TB33 AC097381.1-201ENST00000429019 1296 ntBASIC19.77■□□□□ 0.76
LINC01560Q8TB33 MIR3181-201ENST00000578512 73 ntBASIC19.77■□□□□ 0.76
LINC01560Q8TB33 AC087623.3-201ENST00000607047 1098 ntBASIC19.77■□□□□ 0.76
LINC01560Q8TB33 AC136469.2-201ENST00000623944 1028 ntBASIC19.77■□□□□ 0.76
LINC01560Q8TB33 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LINC01560Q8TB33 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
LINC01560Q8TB33 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
LINC01560Q8TB33 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
LINC01560Q8TB33 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
LINC01560Q8TB33 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 15.2 ms