Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL499627.2-201ENST00000606283 725 ntBASIC27.45■■□□□ 1.98
SMC1BQ8NDV3 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC27.45■■□□□ 1.98
SMC1BQ8NDV3 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
SMC1BQ8NDV3 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC27.44■■□□□ 1.98
SMC1BQ8NDV3 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
SMC1BQ8NDV3 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC27.44■■□□□ 1.98
SMC1BQ8NDV3 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
SMC1BQ8NDV3 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC27.44■■□□□ 1.98
SMC1BQ8NDV3 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
SMC1BQ8NDV3 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC27.43■■□□□ 1.98
SMC1BQ8NDV3 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC27.43■■□□□ 1.98
SMC1BQ8NDV3 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
SMC1BQ8NDV3 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC27.43■■□□□ 1.98
SMC1BQ8NDV3 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
SMC1BQ8NDV3 DRD5P2-201ENST00000421395 2012 ntBASIC27.43■■□□□ 1.98
SMC1BQ8NDV3 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC27.43■■□□□ 1.98
SMC1BQ8NDV3 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC27.42■■□□□ 1.98
SMC1BQ8NDV3 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC27.42■■□□□ 1.98
SMC1BQ8NDV3 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC27.42■■□□□ 1.98
SMC1BQ8NDV3 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC27.42■■□□□ 1.98
SMC1BQ8NDV3 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC27.42■■□□□ 1.98
SMC1BQ8NDV3 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
SMC1BQ8NDV3 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC27.41■■□□□ 1.98
SMC1BQ8NDV3 NT5C3AP1-201ENST00000394500 1012 ntBASIC27.41■■□□□ 1.98
SMC1BQ8NDV3 AC137761.2-201ENST00000561729 223 ntBASIC27.41■■□□□ 1.98
SMC1BQ8NDV3 AC145350.3-201ENST00000569033 163 ntBASIC27.41■■□□□ 1.98
SMC1BQ8NDV3 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC27.41■■□□□ 1.98
SMC1BQ8NDV3 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
SMC1BQ8NDV3 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC27.41■■□□□ 1.98
SMC1BQ8NDV3 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC27.41■■□□□ 1.98
SMC1BQ8NDV3 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC27.4■■□□□ 1.98
SMC1BQ8NDV3 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC27.4■■□□□ 1.98
SMC1BQ8NDV3 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC27.4■■□□□ 1.98
SMC1BQ8NDV3 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC27.4■■□□□ 1.98
SMC1BQ8NDV3 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC27.39■■□□□ 1.98
SMC1BQ8NDV3 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC27.39■■□□□ 1.98
SMC1BQ8NDV3 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC27.39■■□□□ 1.97
SMC1BQ8NDV3 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC27.39■■□□□ 1.97
SMC1BQ8NDV3 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC27.38■■□□□ 1.97
SMC1BQ8NDV3 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC27.38■■□□□ 1.97
SMC1BQ8NDV3 NCF1B-203ENST00000435988 1254 ntBASIC27.38■■□□□ 1.97
SMC1BQ8NDV3 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SMC1BQ8NDV3 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC27.38■■□□□ 1.97
SMC1BQ8NDV3 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
SMC1BQ8NDV3 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 CROCCP5-201ENST00000436658 830 ntBASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 AC093827.2-201ENST00000512654 315 ntBASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 PARP1-210ENST00000629232 477 ntTSL 5 BASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
SMC1BQ8NDV3 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SMC1BQ8NDV3 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
SMC1BQ8NDV3 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SMC1BQ8NDV3 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC27.36■■□□□ 1.97
SMC1BQ8NDV3 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC27.36■■□□□ 1.97
SMC1BQ8NDV3 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
SMC1BQ8NDV3 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC27.36■■□□□ 1.97
SMC1BQ8NDV3 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC27.35■■□□□ 1.97
SMC1BQ8NDV3 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
SMC1BQ8NDV3 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
SMC1BQ8NDV3 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC27.35■■□□□ 1.97
SMC1BQ8NDV3 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC27.35■■□□□ 1.97
SMC1BQ8NDV3 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
SMC1BQ8NDV3 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC27.34■■□□□ 1.97
SMC1BQ8NDV3 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
SMC1BQ8NDV3 ARL16-209ENST00000573715 763 ntTSL 3 BASIC27.34■■□□□ 1.97
SMC1BQ8NDV3 ARL16-211ENST00000576135 694 ntTSL 3 BASIC27.34■■□□□ 1.97
SMC1BQ8NDV3 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
SMC1BQ8NDV3 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC27.34■■□□□ 1.97
SMC1BQ8NDV3 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC27.34■■□□□ 1.97
SMC1BQ8NDV3 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC27.34■■□□□ 1.97
SMC1BQ8NDV3 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC27.34■■□□□ 1.97
SMC1BQ8NDV3 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
SMC1BQ8NDV3 APTR-205ENST00000447009 902 ntTSL 2 BASIC27.33■■□□□ 1.97
SMC1BQ8NDV3 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC27.33■■□□□ 1.97
SMC1BQ8NDV3 BID-214ENST00000617586 542 ntTSL 5 BASIC27.33■■□□□ 1.97
SMC1BQ8NDV3 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC27.33■■□□□ 1.96
SMC1BQ8NDV3 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC27.32■■□□□ 1.96
SMC1BQ8NDV3 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SMC1BQ8NDV3 HSCB-202ENST00000398941 955 ntTSL 2 BASIC27.32■■□□□ 1.96
SMC1BQ8NDV3 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC27.32■■□□□ 1.96
SMC1BQ8NDV3 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SMC1BQ8NDV3 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
SMC1BQ8NDV3 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
SMC1BQ8NDV3 AP004609.3-201ENST00000610705 1884 ntBASIC27.32■■□□□ 1.96
SMC1BQ8NDV3 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
SMC1BQ8NDV3 DET1-205ENST00000558413 583 ntTSL 4 BASIC27.31■■□□□ 1.96
SMC1BQ8NDV3 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC27.31■■□□□ 1.96
SMC1BQ8NDV3 pRNA.6-201ENST00000610482 90 ntBASIC27.31■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms