Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DEPDC4Q8N2C3 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DEPDC4Q8N2C3 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
DEPDC4Q8N2C3 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.05■□□□□ 0.96
DEPDC4Q8N2C3 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DEPDC4Q8N2C3 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
DEPDC4Q8N2C3 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
DEPDC4Q8N2C3 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DEPDC4Q8N2C3 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC21.05■□□□□ 0.96
DEPDC4Q8N2C3 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DEPDC4Q8N2C3 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
DEPDC4Q8N2C3 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DEPDC4Q8N2C3 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DEPDC4Q8N2C3 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DEPDC4Q8N2C3 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
DEPDC4Q8N2C3 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
DEPDC4Q8N2C3 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
DEPDC4Q8N2C3 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DEPDC4Q8N2C3 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
DEPDC4Q8N2C3 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.03■□□□□ 0.96
DEPDC4Q8N2C3 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC21.03■□□□□ 0.96
DEPDC4Q8N2C3 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
DEPDC4Q8N2C3 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
DEPDC4Q8N2C3 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
DEPDC4Q8N2C3 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
DEPDC4Q8N2C3 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
DEPDC4Q8N2C3 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
DEPDC4Q8N2C3 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
DEPDC4Q8N2C3 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
DEPDC4Q8N2C3 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
DEPDC4Q8N2C3 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
DEPDC4Q8N2C3 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC21.02■□□□□ 0.96
DEPDC4Q8N2C3 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.02■□□□□ 0.96
DEPDC4Q8N2C3 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
DEPDC4Q8N2C3 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
DEPDC4Q8N2C3 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
DEPDC4Q8N2C3 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
DEPDC4Q8N2C3 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
DEPDC4Q8N2C3 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
DEPDC4Q8N2C3 PKD1P6-201ENST00000343738 4769 ntBASIC21.01■□□□□ 0.95
DEPDC4Q8N2C3 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
DEPDC4Q8N2C3 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.01■□□□□ 0.95
DEPDC4Q8N2C3 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
DEPDC4Q8N2C3 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
DEPDC4Q8N2C3 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
DEPDC4Q8N2C3 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
DEPDC4Q8N2C3 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
DEPDC4Q8N2C3 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
DEPDC4Q8N2C3 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
DEPDC4Q8N2C3 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.01■□□□□ 0.95
DEPDC4Q8N2C3 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21■□□□□ 0.95
DEPDC4Q8N2C3 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC21■□□□□ 0.95
DEPDC4Q8N2C3 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21■□□□□ 0.95
DEPDC4Q8N2C3 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
DEPDC4Q8N2C3 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC21■□□□□ 0.95
DEPDC4Q8N2C3 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
DEPDC4Q8N2C3 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
DEPDC4Q8N2C3 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
DEPDC4Q8N2C3 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
DEPDC4Q8N2C3 KRT18P10-201ENST00000388836 1287 ntBASIC20.99■□□□□ 0.95
DEPDC4Q8N2C3 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC20.99■□□□□ 0.95
DEPDC4Q8N2C3 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
DEPDC4Q8N2C3 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
DEPDC4Q8N2C3 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
DEPDC4Q8N2C3 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
DEPDC4Q8N2C3 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
DEPDC4Q8N2C3 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC20.98■□□□□ 0.95
DEPDC4Q8N2C3 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
DEPDC4Q8N2C3 SPCS2P3-201ENST00000500401 656 ntBASIC20.98■□□□□ 0.95
DEPDC4Q8N2C3 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC20.98■□□□□ 0.95
DEPDC4Q8N2C3 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
DEPDC4Q8N2C3 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.98■□□□□ 0.95
DEPDC4Q8N2C3 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
DEPDC4Q8N2C3 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
DEPDC4Q8N2C3 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
DEPDC4Q8N2C3 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DEPDC4Q8N2C3 IDNK-203ENST00000405990 629 ntTSL 2 BASIC20.97■□□□□ 0.95
DEPDC4Q8N2C3 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DEPDC4Q8N2C3 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DEPDC4Q8N2C3 FOXO3B-201ENST00000395675 1928 ntBASIC20.97■□□□□ 0.95
DEPDC4Q8N2C3 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
DEPDC4Q8N2C3 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
DEPDC4Q8N2C3 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
DEPDC4Q8N2C3 ANOS2P-203ENST00000472227 1816 ntBASIC20.97■□□□□ 0.95
DEPDC4Q8N2C3 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DEPDC4Q8N2C3 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
DEPDC4Q8N2C3 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC20.96■□□□□ 0.95
DEPDC4Q8N2C3 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
DEPDC4Q8N2C3 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
DEPDC4Q8N2C3 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
DEPDC4Q8N2C3 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC20.95■□□□□ 0.95
DEPDC4Q8N2C3 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
DEPDC4Q8N2C3 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC20.95■□□□□ 0.94
DEPDC4Q8N2C3 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.95■□□□□ 0.94
DEPDC4Q8N2C3 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms