Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
NPHP3Q7Z494 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC31.43■■■□□ 2.62
NPHP3Q7Z494 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC31.43■■■□□ 2.62
NPHP3Q7Z494 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
NPHP3Q7Z494 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
NPHP3Q7Z494 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
NPHP3Q7Z494 VGF-203ENST00000611537 1622 ntTSL 5 BASIC31.42■■■□□ 2.62
NPHP3Q7Z494 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
NPHP3Q7Z494 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
NPHP3Q7Z494 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
NPHP3Q7Z494 AICDA-202ENST00000537228 667 ntTSL 5 BASIC31.42■■■□□ 2.62
NPHP3Q7Z494 VPS53-216ENST00000574029 585 ntTSL 4 BASIC31.42■■■□□ 2.62
NPHP3Q7Z494 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC31.42■■■□□ 2.62
NPHP3Q7Z494 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC31.42■■■□□ 2.62
NPHP3Q7Z494 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC31.42■■■□□ 2.62
NPHP3Q7Z494 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC31.41■■■□□ 2.62
NPHP3Q7Z494 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC31.41■■■□□ 2.62
NPHP3Q7Z494 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC31.41■■■□□ 2.62
NPHP3Q7Z494 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC31.41■■■□□ 2.62
NPHP3Q7Z494 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC31.41■■■□□ 2.62
NPHP3Q7Z494 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC31.41■■■□□ 2.62
NPHP3Q7Z494 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC31.41■■■□□ 2.62
NPHP3Q7Z494 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC31.4■■■□□ 2.62
NPHP3Q7Z494 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
NPHP3Q7Z494 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC31.4■■■□□ 2.62
NPHP3Q7Z494 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC31.4■■■□□ 2.62
NPHP3Q7Z494 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
NPHP3Q7Z494 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC31.4■■■□□ 2.62
NPHP3Q7Z494 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC31.4■■■□□ 2.62
NPHP3Q7Z494 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC31.4■■■□□ 2.62
NPHP3Q7Z494 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC31.4■■■□□ 2.62
NPHP3Q7Z494 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC31.39■■■□□ 2.62
NPHP3Q7Z494 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.62
NPHP3Q7Z494 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
NPHP3Q7Z494 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.62
NPHP3Q7Z494 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC31.39■■■□□ 2.62
NPHP3Q7Z494 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC31.39■■■□□ 2.62
NPHP3Q7Z494 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC31.38■■■□□ 2.61
NPHP3Q7Z494 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC31.38■■■□□ 2.61
NPHP3Q7Z494 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
NPHP3Q7Z494 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC31.38■■■□□ 2.61
NPHP3Q7Z494 AC010501.1-201ENST00000606270 1962 ntBASIC31.38■■■□□ 2.61
NPHP3Q7Z494 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
NPHP3Q7Z494 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC31.38■■■□□ 2.61
NPHP3Q7Z494 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC31.38■■■□□ 2.61
NPHP3Q7Z494 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC31.37■■■□□ 2.61
NPHP3Q7Z494 AL022069.1-201ENST00000568025 1636 ntBASIC31.37■■■□□ 2.61
NPHP3Q7Z494 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
NPHP3Q7Z494 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC31.37■■■□□ 2.61
NPHP3Q7Z494 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC31.36■■■□□ 2.61
NPHP3Q7Z494 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
NPHP3Q7Z494 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
NPHP3Q7Z494 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC31.36■■■□□ 2.61
NPHP3Q7Z494 CCDC92B-201ENST00000575506 885 ntBASIC31.36■■■□□ 2.61
NPHP3Q7Z494 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
NPHP3Q7Z494 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC31.36■■■□□ 2.61
NPHP3Q7Z494 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC31.35■■■□□ 2.61
NPHP3Q7Z494 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
NPHP3Q7Z494 NKILA-201ENST00000613231 537 ntTSL 4 BASIC31.35■■■□□ 2.61
NPHP3Q7Z494 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC31.35■■■□□ 2.61
NPHP3Q7Z494 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC31.35■■■□□ 2.61
NPHP3Q7Z494 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
NPHP3Q7Z494 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC31.34■■■□□ 2.61
NPHP3Q7Z494 GXYLT1P2-201ENST00000433312 1230 ntBASIC31.34■■■□□ 2.61
NPHP3Q7Z494 AC012414.1-201ENST00000556676 535 ntBASIC31.34■■■□□ 2.61
NPHP3Q7Z494 pRNA.6-201ENST00000610482 90 ntBASIC31.34■■■□□ 2.61
NPHP3Q7Z494 pRNA.5-201ENST00000612139 90 ntBASIC31.34■■■□□ 2.61
NPHP3Q7Z494 pRNA.11-201ENST00000618423 90 ntBASIC31.34■■■□□ 2.61
NPHP3Q7Z494 pRNA.13-201ENST00000619112 90 ntBASIC31.34■■■□□ 2.61
NPHP3Q7Z494 MIR6084-201ENST00000622012 110 ntBASIC31.34■■■□□ 2.61
NPHP3Q7Z494 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
NPHP3Q7Z494 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
NPHP3Q7Z494 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC31.33■■■□□ 2.61
NPHP3Q7Z494 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
NPHP3Q7Z494 MIR572-201ENST00000384983 95 ntBASIC31.33■■■□□ 2.61
NPHP3Q7Z494 IGHV3-19-201ENST00000521488 291 ntBASIC31.33■■■□□ 2.61
NPHP3Q7Z494 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC31.33■■■□□ 2.61
NPHP3Q7Z494 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC31.33■■■□□ 2.61
NPHP3Q7Z494 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC31.32■■■□□ 2.6
NPHP3Q7Z494 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC31.32■■■□□ 2.6
NPHP3Q7Z494 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC31.32■■■□□ 2.6
NPHP3Q7Z494 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC31.32■■■□□ 2.6
NPHP3Q7Z494 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC31.32■■■□□ 2.6
NPHP3Q7Z494 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC31.32■■■□□ 2.6
NPHP3Q7Z494 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC31.31■■■□□ 2.6
NPHP3Q7Z494 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC31.31■■■□□ 2.6
NPHP3Q7Z494 AL354811.1-201ENST00000610286 706 ntBASIC31.31■■■□□ 2.6
NPHP3Q7Z494 GTSE1-AS1-202ENST00000623117 1518 ntBASIC31.31■■■□□ 2.6
NPHP3Q7Z494 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
NPHP3Q7Z494 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
NPHP3Q7Z494 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC31.3■■■□□ 2.6
NPHP3Q7Z494 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC31.3■■■□□ 2.6
NPHP3Q7Z494 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC31.3■■■□□ 2.6
NPHP3Q7Z494 NTF6G-201ENST00000591094 616 ntBASIC31.3■■■□□ 2.6
NPHP3Q7Z494 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC31.3■■■□□ 2.6
NPHP3Q7Z494 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC31.3■■■□□ 2.6
NPHP3Q7Z494 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC31.3■■■□□ 2.6
NPHP3Q7Z494 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC31.3■■■□□ 2.6
NPHP3Q7Z494 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
NPHP3Q7Z494 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC31.3■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms