Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LMO4P61968 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC18.88■□□□□ 0.61
LMO4P61968 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMO4P61968 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMO4P61968 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMO4P61968 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
LMO4P61968 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LMO4P61968 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
LMO4P61968 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
LMO4P61968 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
LMO4P61968 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
LMO4P61968 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
LMO4P61968 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
LMO4P61968 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC18.87■□□□□ 0.61
LMO4P61968 AL136967.2-201ENST00000623968 743 ntBASIC18.87■□□□□ 0.61
LMO4P61968 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMO4P61968 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
LMO4P61968 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
LMO4P61968 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.86■□□□□ 0.61
LMO4P61968 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
LMO4P61968 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMO4P61968 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMO4P61968 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMO4P61968 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LMO4P61968 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMO4P61968 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC18.86■□□□□ 0.61
LMO4P61968 GRAMD4P4-201ENST00000613563 1115 ntBASIC18.86■□□□□ 0.61
LMO4P61968 AC241377.3-202ENST00000626088 1088 ntBASIC18.86■□□□□ 0.61
LMO4P61968 AC241585.3-202ENST00000628937 1088 ntBASIC18.86■□□□□ 0.61
LMO4P61968 AC245100.8-202ENST00000629247 1058 ntBASIC18.86■□□□□ 0.61
LMO4P61968 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC18.86■□□□□ 0.61
LMO4P61968 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMO4P61968 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC18.86■□□□□ 0.61
LMO4P61968 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
LMO4P61968 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
LMO4P61968 ALDH1A3-203ENST00000557963 1670 ntBASIC18.85■□□□□ 0.61
LMO4P61968 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
LMO4P61968 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC18.85■□□□□ 0.61
LMO4P61968 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMO4P61968 GUK1-205ENST00000366722 850 ntTSL 3 BASIC18.85■□□□□ 0.61
LMO4P61968 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.85■□□□□ 0.61
LMO4P61968 PTCHD3P2-201ENST00000424937 1205 ntBASIC18.85■□□□□ 0.61
LMO4P61968 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMO4P61968 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
LMO4P61968 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.85■□□□□ 0.61
LMO4P61968 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMO4P61968 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
LMO4P61968 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
LMO4P61968 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LMO4P61968 PTMA-205ENST00000410064 814 ntTSL 2 BASIC18.84■□□□□ 0.61
LMO4P61968 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
LMO4P61968 AF213884.3-201ENST00000563833 479 ntBASIC18.84■□□□□ 0.61
LMO4P61968 MIR4767-201ENST00000582827 78 ntBASIC18.84■□□□□ 0.61
LMO4P61968 AL138724.1-201ENST00000606771 1088 ntBASIC18.84■□□□□ 0.61
LMO4P61968 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
LMO4P61968 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
LMO4P61968 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
LMO4P61968 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC18.83■□□□□ 0.61
LMO4P61968 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMO4P61968 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC18.83■□□□□ 0.6
LMO4P61968 MIR939-201ENST00000401314 82 ntBASIC18.83■□□□□ 0.6
LMO4P61968 AP001330.3-201ENST00000520123 633 ntBASIC18.83■□□□□ 0.6
LMO4P61968 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
LMO4P61968 AC011298.3-201ENST00000615796 283 ntBASIC18.83■□□□□ 0.6
LMO4P61968 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC18.83■□□□□ 0.6
LMO4P61968 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMO4P61968 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
LMO4P61968 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
LMO4P61968 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
LMO4P61968 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMO4P61968 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LMO4P61968 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMO4P61968 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMO4P61968 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.82■□□□□ 0.6
LMO4P61968 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMO4P61968 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMO4P61968 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC18.82■□□□□ 0.6
LMO4P61968 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
LMO4P61968 AC135731.1-201ENST00000569415 2548 ntBASIC18.82■□□□□ 0.6
LMO4P61968 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
LMO4P61968 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMO4P61968 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LMO4P61968 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMO4P61968 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC18.81■□□□□ 0.6
LMO4P61968 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LMO4P61968 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
LMO4P61968 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC18.81■□□□□ 0.6
LMO4P61968 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC18.81■□□□□ 0.6
LMO4P61968 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC18.81■□□□□ 0.6
LMO4P61968 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC18.81■□□□□ 0.6
LMO4P61968 NKILA-201ENST00000613231 537 ntTSL 4 BASIC18.81■□□□□ 0.6
LMO4P61968 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMO4P61968 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
LMO4P61968 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC18.81■□□□□ 0.6
LMO4P61968 HES6-206ENST00000409574 738 ntTSL 2 BASIC18.8■□□□□ 0.6
LMO4P61968 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC18.8■□□□□ 0.6
LMO4P61968 AC006455.2-201ENST00000429931 906 ntBASIC18.8■□□□□ 0.6
LMO4P61968 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.8■□□□□ 0.6
LMO4P61968 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
LMO4P61968 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms