Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC32.74■■■□□ 2.83
NPHP4O75161 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC32.74■■■□□ 2.83
NPHP4O75161 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC32.74■■■□□ 2.83
NPHP4O75161 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
NPHP4O75161 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
NPHP4O75161 AC096887.2-201ENST00000623443 1957 ntBASIC32.73■■■□□ 2.83
NPHP4O75161 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
NPHP4O75161 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC32.73■■■□□ 2.83
NPHP4O75161 AC080038.1-201ENST00000611274 1154 ntBASIC32.73■■■□□ 2.83
NPHP4O75161 GXYLT1P5-201ENST00000614548 1189 ntBASIC32.73■■■□□ 2.83
NPHP4O75161 VGF-203ENST00000611537 1622 ntTSL 5 BASIC32.73■■■□□ 2.83
NPHP4O75161 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC32.73■■■□□ 2.83
NPHP4O75161 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
NPHP4O75161 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
NPHP4O75161 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
NPHP4O75161 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC32.72■■■□□ 2.83
NPHP4O75161 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC32.72■■■□□ 2.83
NPHP4O75161 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
NPHP4O75161 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
NPHP4O75161 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
NPHP4O75161 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC32.71■■■□□ 2.83
NPHP4O75161 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC32.71■■■□□ 2.83
NPHP4O75161 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC32.71■■■□□ 2.83
NPHP4O75161 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
NPHP4O75161 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
NPHP4O75161 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC32.7■■■□□ 2.83
NPHP4O75161 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
NPHP4O75161 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC32.7■■■□□ 2.83
NPHP4O75161 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
NPHP4O75161 ST7-202ENST00000323984 2142 ntTSL 5 BASIC32.69■■■□□ 2.82
NPHP4O75161 ST7-207ENST00000393449 2127 ntTSL 5 BASIC32.69■■■□□ 2.82
NPHP4O75161 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
NPHP4O75161 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC32.69■■■□□ 2.82
NPHP4O75161 pRNA.6-201ENST00000610482 90 ntBASIC32.69■■■□□ 2.82
NPHP4O75161 pRNA.5-201ENST00000612139 90 ntBASIC32.69■■■□□ 2.82
NPHP4O75161 NKILA-201ENST00000613231 537 ntTSL 4 BASIC32.69■■■□□ 2.82
NPHP4O75161 pRNA.11-201ENST00000618423 90 ntBASIC32.69■■■□□ 2.82
NPHP4O75161 pRNA.13-201ENST00000619112 90 ntBASIC32.69■■■□□ 2.82
NPHP4O75161 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC32.69■■■□□ 2.82
NPHP4O75161 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
NPHP4O75161 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC32.69■■■□□ 2.82
NPHP4O75161 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC32.69■■■□□ 2.82
NPHP4O75161 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC32.68■■■□□ 2.82
NPHP4O75161 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC32.68■■■□□ 2.82
NPHP4O75161 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC32.68■■■□□ 2.82
NPHP4O75161 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC32.68■■■□□ 2.82
NPHP4O75161 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC32.68■■■□□ 2.82
NPHP4O75161 AC006015.1-201ENST00000429970 570 ntBASIC32.68■■■□□ 2.82
NPHP4O75161 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC32.68■■■□□ 2.82
NPHP4O75161 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
NPHP4O75161 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC32.68■■■□□ 2.82
NPHP4O75161 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC32.68■■■□□ 2.82
NPHP4O75161 AC104771.1-201ENST00000603335 964 ntBASIC32.68■■■□□ 2.82
NPHP4O75161 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
NPHP4O75161 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC32.67■■■□□ 2.82
NPHP4O75161 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
NPHP4O75161 GTSE1-AS1-202ENST00000623117 1518 ntBASIC32.67■■■□□ 2.82
NPHP4O75161 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
NPHP4O75161 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
NPHP4O75161 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC32.67■■■□□ 2.82
NPHP4O75161 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC32.67■■■□□ 2.82
NPHP4O75161 AC073111.5-205ENST00000641717 521 ntBASIC32.67■■■□□ 2.82
NPHP4O75161 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC32.67■■■□□ 2.82
NPHP4O75161 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
NPHP4O75161 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
NPHP4O75161 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC32.66■■■□□ 2.82
NPHP4O75161 AC004691.2-201ENST00000509504 1531 ntAPPRIS P1 TSL 5 BASIC32.66■■■□□ 2.82
NPHP4O75161 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC32.66■■■□□ 2.82
NPHP4O75161 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC32.66■■■□□ 2.82
NPHP4O75161 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC32.66■■■□□ 2.82
NPHP4O75161 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
NPHP4O75161 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC32.66■■■□□ 2.82
NPHP4O75161 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC32.66■■■□□ 2.82
NPHP4O75161 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC32.66■■■□□ 2.82
NPHP4O75161 LINC02228-203ENST00000641970 1355 ntBASIC32.66■■■□□ 2.82
NPHP4O75161 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC32.65■■■□□ 2.82
NPHP4O75161 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC32.65■■■□□ 2.82
NPHP4O75161 CDCA4P2-201ENST00000441182 718 ntBASIC32.65■■■□□ 2.82
NPHP4O75161 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
NPHP4O75161 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC32.65■■■□□ 2.82
NPHP4O75161 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
NPHP4O75161 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC32.64■■■□□ 2.82
NPHP4O75161 KRT18P61-201ENST00000585825 1298 ntBASIC32.64■■■□□ 2.82
NPHP4O75161 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC32.64■■■□□ 2.82
NPHP4O75161 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC32.64■■■□□ 2.82
NPHP4O75161 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC32.63■■■□□ 2.81
NPHP4O75161 SHF-208ENST00000560734 1731 ntTSL 3 BASIC32.63■■■□□ 2.81
NPHP4O75161 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC32.63■■■□□ 2.81
NPHP4O75161 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC32.62■■■□□ 2.81
NPHP4O75161 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
NPHP4O75161 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
NPHP4O75161 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
NPHP4O75161 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC32.62■■■□□ 2.81
NPHP4O75161 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC32.62■■■□□ 2.81
NPHP4O75161 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
NPHP4O75161 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC32.61■■■□□ 2.81
NPHP4O75161 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC32.61■■■□□ 2.81
NPHP4O75161 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC32.61■■■□□ 2.81
NPHP4O75161 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC32.61■■■□□ 2.81
NPHP4O75161 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC32.61■■■□□ 2.81
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms