Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SMIM28A0A1B0GU29 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SMIM28A0A1B0GU29 MIR638-201ENST00000385237 100 ntBASIC24.62■■□□□ 1.53
SMIM28A0A1B0GU29 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
SMIM28A0A1B0GU29 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
SMIM28A0A1B0GU29 AC019069.1-201ENST00000610008 1333 ntBASIC24.61■■□□□ 1.53
SMIM28A0A1B0GU29 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
SMIM28A0A1B0GU29 AC009102.2-201ENST00000606772 1639 ntBASIC24.61■■□□□ 1.53
SMIM28A0A1B0GU29 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC24.61■■□□□ 1.53
SMIM28A0A1B0GU29 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC24.61■■□□□ 1.53
SMIM28A0A1B0GU29 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
SMIM28A0A1B0GU29 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC24.61■■□□□ 1.53
SMIM28A0A1B0GU29 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
SMIM28A0A1B0GU29 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC24.61■■□□□ 1.53
SMIM28A0A1B0GU29 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC24.6■■□□□ 1.53
SMIM28A0A1B0GU29 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SMIM28A0A1B0GU29 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SMIM28A0A1B0GU29 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC24.6■■□□□ 1.53
SMIM28A0A1B0GU29 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
SMIM28A0A1B0GU29 RALB-208ENST00000631312 311 ntTSL 5 BASIC24.6■■□□□ 1.53
SMIM28A0A1B0GU29 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC24.6■■□□□ 1.53
SMIM28A0A1B0GU29 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC24.6■■□□□ 1.53
SMIM28A0A1B0GU29 EI24-204ENST00000527235 1625 ntTSL 5 BASIC24.6■■□□□ 1.53
SMIM28A0A1B0GU29 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
SMIM28A0A1B0GU29 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC24.59■■□□□ 1.53
SMIM28A0A1B0GU29 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
SMIM28A0A1B0GU29 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SMIM28A0A1B0GU29 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
SMIM28A0A1B0GU29 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
SMIM28A0A1B0GU29 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
SMIM28A0A1B0GU29 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
SMIM28A0A1B0GU29 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.53
SMIM28A0A1B0GU29 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
SMIM28A0A1B0GU29 USF2-207ENST00000595068 1612 ntTSL 5 BASIC24.58■■□□□ 1.53
SMIM28A0A1B0GU29 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC24.58■■□□□ 1.53
SMIM28A0A1B0GU29 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC24.58■■□□□ 1.53
SMIM28A0A1B0GU29 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
SMIM28A0A1B0GU29 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC24.58■■□□□ 1.53
SMIM28A0A1B0GU29 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC24.58■■□□□ 1.53
SMIM28A0A1B0GU29 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
SMIM28A0A1B0GU29 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
SMIM28A0A1B0GU29 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
SMIM28A0A1B0GU29 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC24.57■■□□□ 1.52
SMIM28A0A1B0GU29 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
SMIM28A0A1B0GU29 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SMIM28A0A1B0GU29 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
SMIM28A0A1B0GU29 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC24.57■■□□□ 1.52
SMIM28A0A1B0GU29 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
SMIM28A0A1B0GU29 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC24.57■■□□□ 1.52
SMIM28A0A1B0GU29 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
SMIM28A0A1B0GU29 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
SMIM28A0A1B0GU29 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC24.56■■□□□ 1.52
SMIM28A0A1B0GU29 UNC93B3-201ENST00000308076 687 ntBASIC24.56■■□□□ 1.52
SMIM28A0A1B0GU29 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC24.56■■□□□ 1.52
SMIM28A0A1B0GU29 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
SMIM28A0A1B0GU29 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC24.55■■□□□ 1.52
SMIM28A0A1B0GU29 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC24.55■■□□□ 1.52
SMIM28A0A1B0GU29 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SMIM28A0A1B0GU29 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
SMIM28A0A1B0GU29 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
SMIM28A0A1B0GU29 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
SMIM28A0A1B0GU29 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SMIM28A0A1B0GU29 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SMIM28A0A1B0GU29 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
SMIM28A0A1B0GU29 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC24.54■■□□□ 1.52
SMIM28A0A1B0GU29 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
SMIM28A0A1B0GU29 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
SMIM28A0A1B0GU29 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC24.54■■□□□ 1.52
SMIM28A0A1B0GU29 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC24.54■■□□□ 1.52
SMIM28A0A1B0GU29 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC24.53■■□□□ 1.52
SMIM28A0A1B0GU29 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SMIM28A0A1B0GU29 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC24.53■■□□□ 1.52
SMIM28A0A1B0GU29 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
SMIM28A0A1B0GU29 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
SMIM28A0A1B0GU29 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
SMIM28A0A1B0GU29 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC24.53■■□□□ 1.52
SMIM28A0A1B0GU29 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC24.53■■□□□ 1.52
SMIM28A0A1B0GU29 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC24.52■■□□□ 1.52
SMIM28A0A1B0GU29 C17orf82-201ENST00000623772 1530 ntBASIC24.52■■□□□ 1.52
SMIM28A0A1B0GU29 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SMIM28A0A1B0GU29 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC24.52■■□□□ 1.52
SMIM28A0A1B0GU29 PBX2P1-201ENST00000493219 1291 ntBASIC24.52■■□□□ 1.52
SMIM28A0A1B0GU29 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
SMIM28A0A1B0GU29 AC106739.1-201ENST00000617035 715 ntBASIC24.52■■□□□ 1.52
SMIM28A0A1B0GU29 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
SMIM28A0A1B0GU29 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
SMIM28A0A1B0GU29 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC24.52■■□□□ 1.52
SMIM28A0A1B0GU29 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC24.51■■□□□ 1.51
SMIM28A0A1B0GU29 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
SMIM28A0A1B0GU29 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
SMIM28A0A1B0GU29 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
SMIM28A0A1B0GU29 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC24.51■■□□□ 1.51
SMIM28A0A1B0GU29 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
SMIM28A0A1B0GU29 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
SMIM28A0A1B0GU29 AC133561.4-201ENST00000566112 224 ntBASIC24.51■■□□□ 1.51
SMIM28A0A1B0GU29 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC24.51■■□□□ 1.51
SMIM28A0A1B0GU29 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
SMIM28A0A1B0GU29 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC24.51■■□□□ 1.51
SMIM28A0A1B0GU29 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
SMIM28A0A1B0GU29 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 12 ms