Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TTC28Q96AY4 HNRNPA1P56-201ENST00000505767 954 ntBASIC14.48□□□□□ -0.09
TTC28Q96AY4 CACNA1C-AS1-203ENST00000544517 742 ntTSL 4 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 DLX6-203ENST00000555308 666 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 ITGB2-AS1-204ENST00000609592 482 ntTSL 5 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TTC28Q96AY4 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TTC28Q96AY4 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
TTC28Q96AY4 C12orf65-204ENST00000429587 1326 ntAPPRIS P2 TSL 2 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TTC28Q96AY4 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TTC28Q96AY4 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
TTC28Q96AY4 C6orf48-202ENST00000375635 610 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 C6orf48-209ENST00000395789 952 ntAPPRIS P1 TSL 3 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 HNRNPA3P12-201ENST00000437410 1063 ntBASIC14.48□□□□□ -0.09
TTC28Q96AY4 CD276-217ENST00000564751 951 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TTC28Q96AY4 MIR4265-201ENST00000582152 99 ntBASIC14.48□□□□□ -0.09
TTC28Q96AY4 AC015922.3-201ENST00000582780 347 ntTSL 3 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 SNHG15-210ENST00000585030 953 ntTSL 3 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 FXYD3-210ENST00000604621 548 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC14.48□□□□□ -0.09
TTC28Q96AY4 AC099552.4-201ENST00000624248 949 ntBASIC14.48□□□□□ -0.09
TTC28Q96AY4 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TTC28Q96AY4 HRH2-202ENST00000377291 2561 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
TTC28Q96AY4 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.48□□□□□ -0.09
TTC28Q96AY4 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC14.48□□□□□ -0.09
TTC28Q96AY4 RAB8A-202ENST00000586682 1315 ntTSL 2 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 AC012158.1-201ENST00000535684 1366 ntTSL 2 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 AC009093.10-201ENST00000641956 1442 ntBASIC14.47□□□□□ -0.09
TTC28Q96AY4 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 VASH2-205ENST00000366967 1206 ntTSL 2 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 MKL1-204ENST00000402630 747 ntTSL 2 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 AP001922.6-201ENST00000532553 546 ntTSL 5 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 NEMF-210ENST00000556672 590 ntTSL 2 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 INCA1-204ENST00000576820 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 AC022167.5-201ENST00000636296 1250 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 AC068880.1-201ENST00000507289 2297 ntBASIC14.47□□□□□ -0.09
TTC28Q96AY4 CPA1-207ENST00000484324 1303 ntTSL 5 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 ATP6V1B1-AS1-201ENST00000422761 1129 ntTSL 2 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 ARSEP1-202ENST00000430152 499 ntTSL 3 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 GAS5-209ENST00000430245 723 ntTSL 3 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 AC006001.2-202ENST00000439360 508 ntTSL 3 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 AC012513.2-201ENST00000441511 1137 ntBASIC14.47□□□□□ -0.09
TTC28Q96AY4 TONSL-AS1-201ENST00000442850 428 ntTSL 5 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 AC007622.1-201ENST00000488371 535 ntBASIC14.47□□□□□ -0.09
TTC28Q96AY4 VPS18-202ENST00000558474 873 ntTSL 3 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 LINC01836-201ENST00000586061 829 ntTSL 3 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 AL158032.2-201ENST00000616818 195 ntBASIC14.47□□□□□ -0.09
TTC28Q96AY4 GSTT2-202ENST00000621118 1112 ntTSL 5 BASIC14.47□□□□□ -0.09
TTC28Q96AY4 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
TTC28Q96AY4 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.46□□□□□ -0.09
TTC28Q96AY4 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.46□□□□□ -0.09
TTC28Q96AY4 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TTC28Q96AY4 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TTC28Q96AY4 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
TTC28Q96AY4 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
TTC28Q96AY4 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC14.46□□□□□ -0.09
TTC28Q96AY4 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.46□□□□□ -0.09
TTC28Q96AY4 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
TTC28Q96AY4 MBIP-211ENST00000621657 1809 ntTSL 5 BASIC14.46□□□□□ -0.09
TTC28Q96AY4 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC14.46□□□□□ -0.09
TTC28Q96AY4 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
TTC28Q96AY4 KRTAP1-5-201ENST00000361883 1177 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
TTC28Q96AY4 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC14.46□□□□□ -0.09
TTC28Q96AY4 RPSAP6-201ENST00000417882 882 ntBASIC14.46□□□□□ -0.09
TTC28Q96AY4 ZNF32-AS2-201ENST00000418966 905 ntTSL 5 BASIC14.46□□□□□ -0.09
TTC28Q96AY4 AL137078.1-201ENST00000446280 404 ntTSL 2 BASIC14.46□□□□□ -0.09
TTC28Q96AY4 AC079340.2-201ENST00000504957 495 ntTSL 2 BASIC14.46□□□□□ -0.09
TTC28Q96AY4 MSRB1-205ENST00000564908 550 ntTSL 3 BASIC14.46□□□□□ -0.09
TTC28Q96AY4 AP005264.5-201ENST00000590066 467 ntBASIC14.46□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms