Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 ZNF674-AS1-201ENST00000421685 2078 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 AL121992.1-201ENST00000428945 2845 ntTSL 2 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 TCAM1P-207ENST00000485295 1537 ntBASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 AC022137.2-201ENST00000503482 481 ntBASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 USP44-203ENST00000537435 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 ENPP7P5-201ENST00000541031 1031 ntBASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 ISY1-203ENST00000393295 3842 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC15.3■□□□□ 0.04
ATG4AQ8WYN0 UBTF-205ENST00000526094 2459 ntTSL 5 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 AC099548.2-204ENST00000481651 2106 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 ETV4-203ENST00000538265 2147 ntTSL 2 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 C1QTNF9-201ENST00000332018 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 IRF9-202ENST00000396864 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 NEAT1-201ENST00000499732 1811 ntTSL 2 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 STK33-203ENST00000396672 2558 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 AP001002.3-201ENST00000623482 206 ntBASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 PRF1-202ENST00000441259 2533 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 AC111170.3-201ENST00000624282 2464 ntBASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 SPRY1-208ENST00000622283 2352 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 SAMD4B-201ENST00000314471 4519 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 PLEKHB2-206ENST00000409612 2210 ntAPPRIS ALT1 TSL 2 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 AC139712.1-201ENST00000378256 1875 ntBASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 ANGPTL2-202ENST00000373425 3707 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
ATG4AQ8WYN0 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 INTS14-201ENST00000313182 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 GPER1-203ENST00000397092 2971 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 AC009093.2-202ENST00000620513 2079 ntBASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 TEX44-201ENST00000313965 1383 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 AC051649.2-201ENST00000640310 3319 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 PRICKLE3-204ENST00000453382 1937 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 CD79A-201ENST00000221972 1258 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 POM121L8P-201ENST00000417732 1281 ntBASIC15.28■□□□□ 0.04
ATG4AQ8WYN0 AL162726.2-201ENST00000438986 1017 ntBASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms