Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 SERPINA13P-202ENST00000478994 924 ntBASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AC044849.1-201ENST00000519737 1188 ntBASIC4.61□□□□□ -1.67
SYNE1Q8NF91 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 METAP1D-201ENST00000315796 3419 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 AP2A2-202ENST00000448903 4575 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 KIFC3-211ENST00000562903 3221 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
SYNE1Q8NF91 PPP1R26P1-201ENST00000474415 3613 ntBASIC4.61□□□□□ -1.67
SYNE1Q8NF91 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ANKRD30BP2-201ENST00000435744 1610 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 MCPH1-AS1-203ENST00000525186 869 ntTSL 3 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 SDHD-202ENST00000525291 790 ntTSL 3 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 APOBR-201ENST00000431282 3765 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 DNASE1L1-205ENST00000369809 3008 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 TUBBP5-203ENST00000508529 1334 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 IL21R-201ENST00000337929 4849 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 PROS1-202ENST00000394236 3560 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 TMEM198B-204ENST00000484016 896 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 MBTPS1-201ENST00000343411 4338 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 BHLHE40-201ENST00000256495 3473 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 TIPARP-202ENST00000461166 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 TRIM37-202ENST00000393065 3548 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 STIM1-201ENST00000300737 4038 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AC087386.2-201ENST00000623212 4637 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ACKR1-201ENST00000368121 1240 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 EEF1DP6-201ENST00000449232 372 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 EIF4HP1-201ENST00000453115 687 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 MIR4706-201ENST00000582134 82 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 EEF1DP1-201ENST00000585891 896 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AC026740.1-201ENST00000607068 791 ntBASIC4.6□□□□□ -1.67
SYNE1Q8NF91 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 BICRAL-203ENST00000614467 6510 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 SETD4-207ENST00000399215 4272 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
SYNE1Q8NF91 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms