Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 TPT1P11-201ENST00000458482 498 ntBASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 ALG3P1-201ENST00000508806 1114 ntBASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 AC008687.7-202ENST00000637404 953 ntBASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 TSFM-207ENST00000540550 1935 ntTSL 2 BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 AC009093.2-202ENST00000620513 2079 ntBASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
SYNE3Q6ZMZ3 KRT8P4-201ENST00000509735 1454 ntBASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 SDHAF2-201ENST00000301761 2033 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 AGGF1P1-201ENST00000509500 2073 ntBASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 NRSN2-201ENST00000382285 1047 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 AL136309.1-201ENST00000403917 691 ntBASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 AL355994.2-201ENST00000447882 704 ntBASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 PFN2-215ENST00000497148 743 ntTSL 4 BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 AP003171.2-201ENST00000528208 925 ntBASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 AC073413.1-201ENST00000603927 732 ntBASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 BX640514.1-201ENST00000583223 1918 ntBASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
SYNE3Q6ZMZ3 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 AC015688.4-201ENST00000580780 1647 ntBASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 AC006262.1-203ENST00000598170 1634 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 AC022210.1-201ENST00000449856 793 ntBASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 IGHV3-71-201ENST00000523324 359 ntBASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 SNX29P1-201ENST00000548357 1007 ntBASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 MIR4683-201ENST00000579659 81 ntBASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 PPY2P-201ENST00000582808 702 ntBASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 MIR6805-201ENST00000615055 62 ntBASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 CNTNAP3P2-201ENST00000617175 3861 ntBASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 HOGA1-203ENST00000370647 1999 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
SYNE3Q6ZMZ3 AC117489.1-201ENST00000625169 3217 ntBASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms