Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 MYO15B-236ENST00000633867 6323 ntTSL 5 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 MCC-201ENST00000302475 8257 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
PDLIM3Q53GG5 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 TXLNA-201ENST00000373609 5012 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 TCF12-201ENST00000267811 6061 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 TKT-201ENST00000296289 1931 ntTSL 5 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 HSPA7-201ENST00000445535 1927 ntBASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 BANP-203ENST00000393207 2438 ntTSL 2 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 AC007551.1-201ENST00000457394 519 ntBASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 DERL2-202ENST00000570848 657 ntTSL 5 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 AC004790.1-201ENST00000612686 536 ntBASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 HENMT1-202ENST00000370032 1874 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 CSPG4P11-201ENST00000560634 4910 ntBASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 PDIA3P1-201ENST00000471856 1510 ntBASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 NEFH-201ENST00000310624 3783 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 LCOR-203ENST00000371097 4852 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 DISC1-206ENST00000366637 6848 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 MYO7A-202ENST00000409709 7462 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC12.35□□□□□ -0.43
PDLIM3Q53GG5 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 TCF3-201ENST00000262965 4451 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 SEZ6L-203ENST00000360929 6307 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 COL1A1-201ENST00000225964 6727 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 MEGF11-201ENST00000288745 5707 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 LBX2-201ENST00000341396 886 ntTSL 3 BASIC12.34□□□□□ -0.43
PDLIM3Q53GG5 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms