Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC13.01□□□□□ -0.33
CX3CR1P49238 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC13.01□□□□□ -0.33
CX3CR1P49238 PTGES3-207ENST00000614328 2077 ntTSL 3 BASIC13.01□□□□□ -0.33
CX3CR1P49238 ATP6V1C1-202ENST00000518738 2130 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 FES-202ENST00000394300 2302 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 FAM189A2-201ENST00000257515 2423 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 MLXIPL-203ENST00000354613 3215 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 DDN-201ENST00000421952 3749 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 AC079781.5-202ENST00000641784 3743 ntBASIC13.01□□□□□ -0.33
CX3CR1P49238 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
CX3CR1P49238 PPFIA4-202ENST00000295706 6395 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
CX3CR1P49238 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 ELAVL2-201ENST00000223951 3763 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13□□□□□ -0.33
CX3CR1P49238 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC13□□□□□ -0.33
CX3CR1P49238 RPUSD2-201ENST00000315616 2358 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 C17orf53-201ENST00000245382 2272 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC13□□□□□ -0.33
CX3CR1P49238 WAPL-201ENST00000263070 5987 ntTSL 5 BASIC13□□□□□ -0.33
CX3CR1P49238 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
CX3CR1P49238 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 MRPL37P1-201ENST00000592451 1337 ntBASIC13□□□□□ -0.33
CX3CR1P49238 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC13□□□□□ -0.33
CX3CR1P49238 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
CX3CR1P49238 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
CX3CR1P49238 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC13□□□□□ -0.33
CX3CR1P49238 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 TERF1P3-201ENST00000505638 1227 ntBASIC13□□□□□ -0.33
CX3CR1P49238 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC13□□□□□ -0.33
CX3CR1P49238 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC13□□□□□ -0.33
CX3CR1P49238 AC138761.1-201ENST00000584393 385 ntBASIC13□□□□□ -0.33
CX3CR1P49238 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CX3CR1P49238 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
CX3CR1P49238 TFAM-204ENST00000487519 5414 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 FRZB-201ENST00000295113 3162 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13□□□□□ -0.33
CX3CR1P49238 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 GOLIM4-202ENST00000470487 4373 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC13□□□□□ -0.33
CX3CR1P49238 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13□□□□□ -0.33
CX3CR1P49238 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13□□□□□ -0.33
CX3CR1P49238 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
CX3CR1P49238 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13□□□□□ -0.33
CX3CR1P49238 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC13□□□□□ -0.33
CX3CR1P49238 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
CX3CR1P49238 PRELP-201ENST00000343110 5747 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
CX3CR1P49238 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CX3CR1P49238 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC12.99□□□□□ -0.33
CX3CR1P49238 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
CX3CR1P49238 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC12.99□□□□□ -0.33
CX3CR1P49238 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC12.99□□□□□ -0.33
CX3CR1P49238 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 MBD4-201ENST00000249910 2470 ntAPPRIS P3 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 ZBED8-202ENST00000523213 2484 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 USP4-203ENST00000415188 1454 ntTSL 3 BASIC12.99□□□□□ -0.33
CX3CR1P49238 HIPK3-202ENST00000379016 7345 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC12.99□□□□□ -0.33
CX3CR1P49238 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC12.99□□□□□ -0.33
CX3CR1P49238 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC12.99□□□□□ -0.33
CX3CR1P49238 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC12.99□□□□□ -0.33
CX3CR1P49238 AL138725.1-201ENST00000407347 1314 ntBASIC12.99□□□□□ -0.33
CX3CR1P49238 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
CX3CR1P49238 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC12.99□□□□□ -0.33
CX3CR1P49238 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
CX3CR1P49238 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC12.99□□□□□ -0.33
CX3CR1P49238 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC12.99□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 213.6 ms