Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
SOX3P41225 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 AHCYP2-201ENST00000430630 1300 ntBASIC13.94□□□□□ -0.18
SOX3P41225 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC13.94□□□□□ -0.18
SOX3P41225 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 AC113367.3-201ENST00000508316 1912 ntBASIC13.94□□□□□ -0.18
SOX3P41225 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC13.94□□□□□ -0.18
SOX3P41225 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
SOX3P41225 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC13.94□□□□□ -0.18
SOX3P41225 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC13.94□□□□□ -0.18
SOX3P41225 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC13.94□□□□□ -0.18
SOX3P41225 AC023310.1-201ENST00000554836 735 ntBASIC13.94□□□□□ -0.18
SOX3P41225 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC13.94□□□□□ -0.18
SOX3P41225 RAD17-207ENST00000361732 3002 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC13.94□□□□□ -0.18
SOX3P41225 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.94□□□□□ -0.18
SOX3P41225 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC13.94□□□□□ -0.18
SOX3P41225 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SOX3P41225 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC13.93□□□□□ -0.18
SOX3P41225 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
SOX3P41225 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC13.93□□□□□ -0.18
SOX3P41225 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
SOX3P41225 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
SOX3P41225 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.93□□□□□ -0.18
SOX3P41225 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
SOX3P41225 AC005252.3-201ENST00000623855 2258 ntBASIC13.93□□□□□ -0.18
SOX3P41225 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC13.93□□□□□ -0.18
SOX3P41225 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC13.93□□□□□ -0.18
SOX3P41225 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
SOX3P41225 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
SOX3P41225 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
SOX3P41225 TPO-206ENST00000382269 1155 ntTSL 5 BASIC13.93□□□□□ -0.18
SOX3P41225 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC13.93□□□□□ -0.18
SOX3P41225 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC13.93□□□□□ -0.18
SOX3P41225 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC13.93□□□□□ -0.18
SOX3P41225 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC13.93□□□□□ -0.18
SOX3P41225 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC13.93□□□□□ -0.18
SOX3P41225 AC026434.2-201ENST00000506094 1078 ntBASIC13.93□□□□□ -0.18
SOX3P41225 RNA5SP412-201ENST00000516234 123 ntBASIC13.93□□□□□ -0.18
SOX3P41225 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC13.93□□□□□ -0.18
SOX3P41225 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 AL583810.1-201ENST00000553344 1045 ntBASIC13.93□□□□□ -0.18
SOX3P41225 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.93□□□□□ -0.18
SOX3P41225 AC004466.1-201ENST00000599515 1080 ntBASIC13.93□□□□□ -0.18
SOX3P41225 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 BCAR1-205ENST00000420641 2725 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
SOX3P41225 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC13.93□□□□□ -0.18
SOX3P41225 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC13.93□□□□□ -0.18
SOX3P41225 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 SCYL1-208ENST00000527009 2586 ntTSL 5 BASIC13.93□□□□□ -0.18
SOX3P41225 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC13.93□□□□□ -0.18
SOX3P41225 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
SOX3P41225 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC13.93□□□□□ -0.18
SOX3P41225 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
SOX3P41225 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SOX3P41225 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.92□□□□□ -0.18
SOX3P41225 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC13.92□□□□□ -0.18
SOX3P41225 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.92□□□□□ -0.18
SOX3P41225 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms