Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
BRCA1P38398 SALL4P6-201ENST00000429385 1691 ntBASIC17.19■□□□□ 0.34
BRCA1P38398 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.19■□□□□ 0.34
BRCA1P38398 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BRCA1P38398 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
BRCA1P38398 AC011270.2-201ENST00000624293 2550 ntBASIC17.19■□□□□ 0.34
BRCA1P38398 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
BRCA1P38398 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BRCA1P38398 AC103702.1-201ENST00000548801 2630 ntBASIC17.19■□□□□ 0.34
BRCA1P38398 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC17.19■□□□□ 0.34
BRCA1P38398 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BRCA1P38398 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BRCA1P38398 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC17.19■□□□□ 0.34
BRCA1P38398 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
BRCA1P38398 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BRCA1P38398 CYP4B1-201ENST00000271153 2171 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
BRCA1P38398 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BRCA1P38398 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
BRCA1P38398 MPV17-209ENST00000405983 859 ntTSL 5 BASIC17.18■□□□□ 0.34
BRCA1P38398 KCNK15-AS1-202ENST00000427303 528 ntTSL 5 BASIC17.18■□□□□ 0.34
BRCA1P38398 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC17.18■□□□□ 0.34
BRCA1P38398 HNRNPA1P56-201ENST00000505767 954 ntBASIC17.18■□□□□ 0.34
BRCA1P38398 SNHG4-204ENST00000507197 865 ntTSL 2 BASIC17.18■□□□□ 0.34
BRCA1P38398 IFNL3P1-201ENST00000595082 501 ntBASIC17.18■□□□□ 0.34
BRCA1P38398 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
BRCA1P38398 SULT1A1-203ENST00000395607 1386 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
BRCA1P38398 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BRCA1P38398 AC232323.1-201ENST00000540724 2099 ntBASIC17.18■□□□□ 0.34
BRCA1P38398 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
BRCA1P38398 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BRCA1P38398 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BRCA1P38398 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BRCA1P38398 SELPLG-202ENST00000388962 1613 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
BRCA1P38398 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC17.18■□□□□ 0.34
BRCA1P38398 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
BRCA1P38398 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.18■□□□□ 0.34
BRCA1P38398 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC17.18■□□□□ 0.34
BRCA1P38398 PEBP1P3-201ENST00000455475 548 ntBASIC17.18■□□□□ 0.34
BRCA1P38398 TSTD1-206ENST00000466967 477 ntTSL 2 BASIC17.18■□□□□ 0.34
BRCA1P38398 CD81-209ENST00000492627 886 ntTSL 3 BASIC17.18■□□□□ 0.34
BRCA1P38398 SMAD1-AS1-201ENST00000513542 481 ntTSL 2 BASIC17.18■□□□□ 0.34
BRCA1P38398 SRPK2P-201ENST00000523408 1100 ntBASIC17.18■□□□□ 0.34
BRCA1P38398 WNT5B-206ENST00000542408 508 ntTSL 3 BASIC17.18■□□□□ 0.34
BRCA1P38398 GLT8D2-204ENST00000547583 862 ntTSL 5 BASIC17.18■□□□□ 0.34
BRCA1P38398 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC17.18■□□□□ 0.34
BRCA1P38398 RPS5-205ENST00000598495 800 ntTSL 3 BASIC17.18■□□□□ 0.34
BRCA1P38398 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BRCA1P38398 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC17.18■□□□□ 0.34
BRCA1P38398 ZFP1-201ENST00000332307 1502 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BRCA1P38398 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BRCA1P38398 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC17.17■□□□□ 0.34
BRCA1P38398 MEFV-203ENST00000536379 1713 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
BRCA1P38398 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BRCA1P38398 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC17.17■□□□□ 0.34
BRCA1P38398 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
BRCA1P38398 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BRCA1P38398 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BRCA1P38398 S100B-201ENST00000291700 877 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BRCA1P38398 MIR339-201ENST00000362153 94 ntBASIC17.17■□□□□ 0.34
BRCA1P38398 AC000077.1-201ENST00000420012 953 ntBASIC17.17■□□□□ 0.34
BRCA1P38398 AC092295.1-201ENST00000446262 434 ntTSL 3 BASIC17.17■□□□□ 0.34
BRCA1P38398 IP6K2-223ENST00000453202 571 ntTSL 4 BASIC17.17■□□□□ 0.34
BRCA1P38398 SLC25A15P1-201ENST00000456738 342 ntBASIC17.17■□□□□ 0.34
BRCA1P38398 AC122694.1-201ENST00000510987 563 ntTSL 4 BASIC17.17■□□□□ 0.34
BRCA1P38398 RN7SL605P-201ENST00000577229 281 ntBASIC17.17■□□□□ 0.34
BRCA1P38398 CBR3-AS1-210ENST00000623484 392 ntTSL 5 BASIC17.17■□□□□ 0.34
BRCA1P38398 CBR3-AS1-215ENST00000624086 594 ntTSL 5 BASIC17.17■□□□□ 0.34
BRCA1P38398 RPL13AP3-202ENST00000494676 1473 ntBASIC17.17■□□□□ 0.34
BRCA1P38398 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.17■□□□□ 0.34
BRCA1P38398 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC17.17■□□□□ 0.34
BRCA1P38398 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BRCA1P38398 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC17.17■□□□□ 0.34
BRCA1P38398 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.17■□□□□ 0.34
BRCA1P38398 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC17.17■□□□□ 0.34
BRCA1P38398 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
BRCA1P38398 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
BRCA1P38398 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC17.17■□□□□ 0.34
BRCA1P38398 PRAL-201ENST00000624952 3286 ntBASIC17.17■□□□□ 0.34
BRCA1P38398 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BRCA1P38398 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BRCA1P38398 SLC20A2-207ENST00000520179 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC17.16■□□□□ 0.34
BRCA1P38398 USP39-220ENST00000613444 2161 ntTSL 2 BASIC17.16■□□□□ 0.34
BRCA1P38398 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 SULT1A2-202ENST00000395630 1322 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
BRCA1P38398 GZMB-201ENST00000216341 968 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 HDGF-202ENST00000368206 960 ntTSL 5 BASIC17.16■□□□□ 0.34
BRCA1P38398 AC103592.1-201ENST00000394513 664 ntBASIC17.16■□□□□ 0.34
BRCA1P38398 AC022447.5-201ENST00000504817 392 ntBASIC17.16■□□□□ 0.34
BRCA1P38398 CCND3P2-201ENST00000579393 537 ntBASIC17.16■□□□□ 0.34
BRCA1P38398 ZNF571-AS1-204ENST00000587121 822 ntTSL 3 BASIC17.16■□□□□ 0.34
BRCA1P38398 AP001462.1-201ENST00000594089 452 ntBASIC17.16■□□□□ 0.34
BRCA1P38398 LINC00969-241ENST00000600527 852 ntTSL 5 BASIC17.16■□□□□ 0.34
BRCA1P38398 LINC00969-322ENST00000630170 584 ntTSL 5 BASIC17.16■□□□□ 0.34
BRCA1P38398 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
BRCA1P38398 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms