Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
RNF4P78317 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
RNF4P78317 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.66□□□□□ -0.22
RNF4P78317 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.66□□□□□ -0.22
RNF4P78317 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.66□□□□□ -0.22
RNF4P78317 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
RNF4P78317 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
RNF4P78317 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
RNF4P78317 SMS-201ENST00000379404 1174 ntTSL 3 BASIC13.66□□□□□ -0.22
RNF4P78317 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC13.66□□□□□ -0.22
RNF4P78317 FAM58BP-201ENST00000439056 645 ntBASIC13.66□□□□□ -0.22
RNF4P78317 AC006033.1-201ENST00000440505 426 ntBASIC13.66□□□□□ -0.22
RNF4P78317 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC13.66□□□□□ -0.22
RNF4P78317 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC13.66□□□□□ -0.22
RNF4P78317 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC13.66□□□□□ -0.22
RNF4P78317 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC13.66□□□□□ -0.22
RNF4P78317 AC103988.2-201ENST00000561804 725 ntBASIC13.66□□□□□ -0.22
RNF4P78317 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC13.66□□□□□ -0.22
RNF4P78317 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC13.66□□□□□ -0.22
RNF4P78317 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC13.66□□□□□ -0.22
RNF4P78317 AL023803.2-201ENST00000620080 638 ntBASIC13.66□□□□□ -0.22
RNF4P78317 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC13.66□□□□□ -0.22
RNF4P78317 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC13.66□□□□□ -0.22
RNF4P78317 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 AL137784.3-201ENST00000623858 2288 ntBASIC13.66□□□□□ -0.22
RNF4P78317 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 CTTN-202ENST00000346329 3272 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 BLCAP-205ENST00000397137 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 C12orf76-209ENST00000615315 1580 ntTSL 5 BASIC13.66□□□□□ -0.22
RNF4P78317 AL590440.2-201ENST00000641973 1595 ntBASIC13.66□□□□□ -0.22
RNF4P78317 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 LINC01864-201ENST00000587218 1661 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC13.66□□□□□ -0.22
RNF4P78317 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
RNF4P78317 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 GRN-222ENST00000639447 1314 ntTSL 2 BASIC13.65□□□□□ -0.22
RNF4P78317 AC139712.1-201ENST00000378256 1875 ntBASIC13.65□□□□□ -0.22
RNF4P78317 LINC02076-201ENST00000577684 1871 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 HARS-202ENST00000415192 1401 ntTSL 2 BASIC13.65□□□□□ -0.22
RNF4P78317 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
RNF4P78317 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC13.65□□□□□ -0.22
RNF4P78317 AC018735.1-201ENST00000437208 1502 ntBASIC13.65□□□□□ -0.22
RNF4P78317 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 AC015688.4-201ENST00000580780 1647 ntBASIC13.65□□□□□ -0.22
RNF4P78317 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC13.65□□□□□ -0.22
RNF4P78317 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
RNF4P78317 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC13.65□□□□□ -0.22
RNF4P78317 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.65□□□□□ -0.22
RNF4P78317 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC13.65□□□□□ -0.22
RNF4P78317 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC13.65□□□□□ -0.22
RNF4P78317 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC13.65□□□□□ -0.22
RNF4P78317 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC13.65□□□□□ -0.22
RNF4P78317 AC004898.1-201ENST00000451057 766 ntBASIC13.65□□□□□ -0.22
RNF4P78317 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC13.65□□□□□ -0.22
RNF4P78317 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 TUBB8P8-201ENST00000458717 1058 ntBASIC13.65□□□□□ -0.22
RNF4P78317 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC13.65□□□□□ -0.22
RNF4P78317 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC13.65□□□□□ -0.22
RNF4P78317 EMC4-209ENST00000559421 497 ntTSL 2 BASIC13.65□□□□□ -0.22
RNF4P78317 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC13.65□□□□□ -0.22
RNF4P78317 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC13.65□□□□□ -0.22
RNF4P78317 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC13.65□□□□□ -0.22
RNF4P78317 MIR4525-201ENST00000580000 75 ntBASIC13.65□□□□□ -0.22
RNF4P78317 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC13.65□□□□□ -0.22
RNF4P78317 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC13.65□□□□□ -0.22
RNF4P78317 AC243960.2-201ENST00000600996 747 ntBASIC13.65□□□□□ -0.22
RNF4P78317 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.65□□□□□ -0.22
RNF4P78317 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
RNF4P78317 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC13.65□□□□□ -0.22
RNF4P78317 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.65□□□□□ -0.22
RNF4P78317 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms