Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC14.37□□□□□ -0.11
HNF4AP41235 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC14.37□□□□□ -0.11
HNF4AP41235 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
HNF4AP41235 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC14.37□□□□□ -0.11
HNF4AP41235 AL590640.2-201ENST00000457038 527 ntBASIC14.37□□□□□ -0.11
HNF4AP41235 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.37□□□□□ -0.11
HNF4AP41235 FTLP10-202ENST00000505798 471 ntBASIC14.37□□□□□ -0.11
HNF4AP41235 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.37□□□□□ -0.11
HNF4AP41235 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.37□□□□□ -0.11
HNF4AP41235 ECM1P1-201ENST00000604092 1279 ntBASIC14.37□□□□□ -0.11
HNF4AP41235 AC138696.2-201ENST00000607376 223 ntBASIC14.37□□□□□ -0.11
HNF4AP41235 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 AC138466.3-201ENST00000619983 221 ntBASIC14.37□□□□□ -0.11
HNF4AP41235 AC132938.4-201ENST00000623835 848 ntBASIC14.37□□□□□ -0.11
HNF4AP41235 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 TBC1D8B-203ENST00000357242 5717 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 CLUHP2-201ENST00000426660 1303 ntBASIC14.37□□□□□ -0.11
HNF4AP41235 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HNF4AP41235 CAMK2A-203ENST00000398376 1493 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.37□□□□□ -0.11
HNF4AP41235 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.37□□□□□ -0.11
HNF4AP41235 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HNF4AP41235 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
HNF4AP41235 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
HNF4AP41235 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.36□□□□□ -0.11
HNF4AP41235 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
HNF4AP41235 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
HNF4AP41235 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.36□□□□□ -0.11
HNF4AP41235 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 FOXP3-203ENST00000376207 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 TPM3P8-201ENST00000330554 643 ntBASIC14.36□□□□□ -0.11
HNF4AP41235 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.36□□□□□ -0.11
HNF4AP41235 RN7SKP230-201ENST00000365642 335 ntBASIC14.36□□□□□ -0.11
HNF4AP41235 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.36□□□□□ -0.11
HNF4AP41235 KRT43P-201ENST00000434019 910 ntBASIC14.36□□□□□ -0.11
HNF4AP41235 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.36□□□□□ -0.11
HNF4AP41235 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC14.36□□□□□ -0.11
HNF4AP41235 AC007551.1-201ENST00000457394 519 ntBASIC14.36□□□□□ -0.11
HNF4AP41235 NAA50-208ENST00000497255 789 ntTSL 5 BASIC14.36□□□□□ -0.11
HNF4AP41235 GCOM2-201ENST00000509133 1104 ntBASIC14.36□□□□□ -0.11
HNF4AP41235 KRT17P8-201ENST00000540749 863 ntBASIC14.36□□□□□ -0.11
HNF4AP41235 AL118558.1-202ENST00000557242 451 ntTSL 3 BASIC14.36□□□□□ -0.11
HNF4AP41235 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC14.36□□□□□ -0.11
HNF4AP41235 GNRHR2-203ENST00000581100 1187 ntBASIC14.36□□□□□ -0.11
HNF4AP41235 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.36□□□□□ -0.11
HNF4AP41235 CEP295NL-201ENST00000322630 2090 ntTSL 2 BASIC14.36□□□□□ -0.11
HNF4AP41235 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.36□□□□□ -0.11
HNF4AP41235 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 LRRC34-208ENST00000522830 1781 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HNF4AP41235 TNFAIP8L3-201ENST00000327536 2262 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 TGM6-202ENST00000381423 2158 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HNF4AP41235 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HNF4AP41235 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 BTNL8-206ENST00000508408 1717 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.35□□□□□ -0.11
HNF4AP41235 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC14.35□□□□□ -0.11
HNF4AP41235 FP565260.2-201ENST00000623476 1599 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
HNF4AP41235 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
HNF4AP41235 DAAM2-201ENST00000274867 6194 ntAPPRIS ALT1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC14.35□□□□□ -0.11
HNF4AP41235 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 GABRB3-219ENST00000636466 4509 ntTSL 5 BASIC14.35□□□□□ -0.11
HNF4AP41235 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HNF4AP41235 GUK1-206ENST00000366723 845 ntTSL 5 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms