Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
HLA-DMBP28068 ADK-205ENST00000539909 1866 ntTSL 2 BASIC11.32□□□□□ -0.6
HLA-DMBP28068 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
HLA-DMBP28068 USP4-203ENST00000415188 1454 ntTSL 3 BASIC11.32□□□□□ -0.6
HLA-DMBP28068 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC11.32□□□□□ -0.6
HLA-DMBP28068 CICP16-201ENST00000502609 2813 ntBASIC11.31□□□□□ -0.6
HLA-DMBP28068 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 RUFY1-204ENST00000437570 2642 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 THY1-206ENST00000528522 2050 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 AC026790.1-201ENST00000399760 2941 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 AC098614.1-201ENST00000368528 745 ntBASIC11.31□□□□□ -0.6
HLA-DMBP28068 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 MPV17-208ENST00000405076 603 ntTSL 5 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 AP006294.1-201ENST00000415407 339 ntBASIC11.31□□□□□ -0.6
HLA-DMBP28068 AC098850.1-201ENST00000419919 790 ntBASIC11.31□□□□□ -0.6
HLA-DMBP28068 NME2P1-201ENST00000426182 414 ntBASIC11.31□□□□□ -0.6
HLA-DMBP28068 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 CR383656.12-201ENST00000549567 513 ntBASIC11.31□□□□□ -0.6
HLA-DMBP28068 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 DUX4L47-201ENST00000566374 394 ntBASIC11.31□□□□□ -0.6
HLA-DMBP28068 IFT20-206ENST00000578122 834 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 IFT20-208ENST00000578985 831 ntTSL 3 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 CHCHD2P3-201ENST00000603038 451 ntBASIC11.31□□□□□ -0.6
HLA-DMBP28068 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 PRSS30P-206ENST00000641773 873 ntBASIC11.31□□□□□ -0.6
HLA-DMBP28068 MST1P2-201ENST00000457982 2291 ntBASIC11.31□□□□□ -0.6
HLA-DMBP28068 CU639417.3-201ENST00000624240 1404 ntBASIC11.31□□□□□ -0.6
HLA-DMBP28068 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 DDX41-208ENST00000507955 2607 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 ATG5-201ENST00000343245 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 CEP131-202ENST00000374782 3505 ntAPPRIS P3 TSL 5 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 CDC37-201ENST00000222005 1608 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 AIPL1-207ENST00000574506 2074 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC11.31□□□□□ -0.6
HLA-DMBP28068 SLCO2B1-203ENST00000428359 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 ITGB8-201ENST00000222573 8751 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
HLA-DMBP28068 RASSF3-204ENST00000542104 3492 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
HLA-DMBP28068 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC11.3□□□□□ -0.6
HLA-DMBP28068 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC11.3□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms