Protein–RNA interactions for Protein: Q96P44

COL21A1, Collagen alpha-1(XXI) chain, humanhuman

Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL21A1Q96P44 AC005034.1-201ENST00000426657 489 ntBASIC14.03□□□□□ -0.16
COL21A1Q96P44 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.03□□□□□ -0.16
COL21A1Q96P44 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC14.03□□□□□ -0.16
COL21A1Q96P44 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC14.03□□□□□ -0.16
COL21A1Q96P44 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC14.03□□□□□ -0.16
COL21A1Q96P44 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
COL21A1Q96P44 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.03□□□□□ -0.16
COL21A1Q96P44 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
COL21A1Q96P44 KRT8P35-201ENST00000483942 1338 ntBASIC14.03□□□□□ -0.16
COL21A1Q96P44 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC14.03□□□□□ -0.16
COL21A1Q96P44 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC14.03□□□□□ -0.16
COL21A1Q96P44 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL21A1Q96P44 AC015802.1-201ENST00000588104 1449 ntBASIC14.03□□□□□ -0.16
COL21A1Q96P44 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL21A1Q96P44 LRRC59-203ENST00000576448 1531 ntBASIC14.03□□□□□ -0.16
COL21A1Q96P44 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL21A1Q96P44 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC14.03□□□□□ -0.16
COL21A1Q96P44 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL21A1Q96P44 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL21A1Q96P44 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC14.03□□□□□ -0.16
COL21A1Q96P44 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL21A1Q96P44 ARHGEF3-212ENST00000495373 2024 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL21A1Q96P44 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC14.03□□□□□ -0.16
COL21A1Q96P44 API5-203ENST00000455725 2257 ntTSL 2 BASIC14.03□□□□□ -0.16
COL21A1Q96P44 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
COL21A1Q96P44 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL21A1Q96P44 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL21A1Q96P44 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL21A1Q96P44 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
COL21A1Q96P44 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL21A1Q96P44 CDK17-201ENST00000261211 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
COL21A1Q96P44 PCDHA5-201ENST00000529619 4157 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
COL21A1Q96P44 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 EBLN3P-202ENST00000625445 4520 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC14.02□□□□□ -0.16
COL21A1Q96P44 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 CMBL-201ENST00000296658 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.02□□□□□ -0.16
COL21A1Q96P44 MX1-218ENST00000619682 1980 ntTSL 5 BASIC14.02□□□□□ -0.16
COL21A1Q96P44 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
COL21A1Q96P44 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC14.02□□□□□ -0.16
COL21A1Q96P44 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL21A1Q96P44 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL21A1Q96P44 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL21A1Q96P44 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL21A1Q96P44 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 AC063926.2-201ENST00000623766 1308 ntBASIC14.02□□□□□ -0.17
COL21A1Q96P44 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL21A1Q96P44 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL21A1Q96P44 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL21A1Q96P44 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL21A1Q96P44 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 B9D1-203ENST00000395615 805 ntTSL 3 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 ACTBP8-201ENST00000403258 1108 ntBASIC14.02□□□□□ -0.17
COL21A1Q96P44 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL21A1Q96P44 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 AL355864.2-201ENST00000447420 863 ntBASIC14.02□□□□□ -0.17
COL21A1Q96P44 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL21A1Q96P44 AC022616.1-201ENST00000518688 554 ntBASIC14.02□□□□□ -0.17
COL21A1Q96P44 SLC25A47P1-201ENST00000531577 414 ntBASIC14.02□□□□□ -0.17
COL21A1Q96P44 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
COL21A1Q96P44 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 AC008735.3-201ENST00000596646 500 ntBASIC14.02□□□□□ -0.17
COL21A1Q96P44 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 AL035252.4-201ENST00000624174 288 ntBASIC14.02□□□□□ -0.17
COL21A1Q96P44 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL21A1Q96P44 TCOF1-202ENST00000377797 5095 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 AKNA-204ENST00000374075 5038 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL21A1Q96P44 TNRC18-203ENST00000399537 10572 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 TNRC18-205ENST00000430969 10562 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 FBRS-201ENST00000287468 2811 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
COL21A1Q96P44 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL21A1Q96P44 PRNP-201ENST00000379440 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
COL21A1Q96P44 WAC-AS1-202ENST00000528337 2608 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms