Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RPS19-201ENST00000221975 500 ntTSL 3 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 CENPM-206ENST00000407253 818 ntTSL 2 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 RPL37AP1-201ENST00000412502 279 ntBASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 RASL12-203ENST00000434605 982 ntTSL 2 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 USP40-206ENST00000443711 628 ntTSL 2 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 ELK1P1-201ENST00000485699 580 ntBASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 ZNF890P-202ENST00000530367 1156 ntBASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 CTBP2P3-201ENST00000585629 1255 ntBASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 AC016629.1-201ENST00000596579 586 ntBASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 AC026740.1-201ENST00000607068 791 ntBASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 AL021578.1-201ENST00000613646 709 ntBASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 WNT11-204ENST00000621122 789 ntTSL 5 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 ZHX1-202ENST00000395571 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 C1orf43-206ENST00000368521 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC12.39□□□□□ -0.43
PDLIM3Q53GG5 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 REXO1L1P-201ENST00000379010 6598 ntBASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 IMPDH1P4-201ENST00000445028 1534 ntBASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 HIST1H2AG-201ENST00000359193 2250 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 AC005229.1-201ENST00000392885 409 ntBASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 PSMB9-208ENST00000395330 792 ntTSL 3 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 AC074338.1-201ENST00000416825 156 ntBASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 MTND6P24-201ENST00000440466 518 ntBASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 KRT8P13-201ENST00000463294 1010 ntBASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 YIF1A-210ENST00000496746 667 ntTSL 2 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 TBCB-211ENST00000589996 724 ntTSL 3 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 BTNL10-201ENST00000595971 695 ntBASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 BX640514.1-201ENST00000583223 1918 ntBASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 REXO1L4P-201ENST00000605109 1937 ntBASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 ZBTB45P1-201ENST00000452761 1456 ntBASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 POLL-206ENST00000370172 2308 ntTSL 2 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.43
PDLIM3Q53GG5 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC12.38□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms