Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CX3CL1P78423 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
CX3CL1P78423 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC11.98□□□□□ -0.49
CX3CL1P78423 AC018442.1-201ENST00000421439 2061 ntBASIC11.98□□□□□ -0.49
CX3CL1P78423 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC11.98□□□□□ -0.49
CX3CL1P78423 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CX3CL1P78423 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
CX3CL1P78423 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC11.98□□□□□ -0.49
CX3CL1P78423 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CX3CL1P78423 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
CX3CL1P78423 NRXN1-207ENST00000404971 7578 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC11.97□□□□□ -0.49
CX3CL1P78423 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
CX3CL1P78423 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC11.97□□□□□ -0.49
CX3CL1P78423 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 COL25A1-201ENST00000399126 2674 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
CX3CL1P78423 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC11.97□□□□□ -0.49
CX3CL1P78423 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 MPI-203ENST00000535694 1523 ntTSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC11.97□□□□□ -0.49
CX3CL1P78423 ANKHD1-203ENST00000360839 8221 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 AC018665.1-201ENST00000622927 1362 ntBASIC11.97□□□□□ -0.49
CX3CL1P78423 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC11.97□□□□□ -0.49
CX3CL1P78423 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC11.97□□□□□ -0.49
CX3CL1P78423 GRAP-202ENST00000395635 834 ntTSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC11.97□□□□□ -0.49
CX3CL1P78423 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC11.97□□□□□ -0.49
CX3CL1P78423 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 TTTY23B-201ENST00000442790 549 ntBASIC11.97□□□□□ -0.49
CX3CL1P78423 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 FUZ-207ENST00000526575 482 ntTSL 4 BASIC11.97□□□□□ -0.49
CX3CL1P78423 SLC25A47P1-201ENST00000531577 414 ntBASIC11.97□□□□□ -0.49
CX3CL1P78423 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC11.97□□□□□ -0.49
CX3CL1P78423 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC11.97□□□□□ -0.49
CX3CL1P78423 LINC02084-201ENST00000606069 1096 ntBASIC11.97□□□□□ -0.49
CX3CL1P78423 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC11.97□□□□□ -0.49
CX3CL1P78423 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC11.97□□□□□ -0.49
CX3CL1P78423 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC11.97□□□□□ -0.49
CX3CL1P78423 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 INTS4P1-203ENST00000641008 3683 ntBASIC11.97□□□□□ -0.49
CX3CL1P78423 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC11.97□□□□□ -0.49
CX3CL1P78423 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC11.97□□□□□ -0.49
CX3CL1P78423 CICP17-201ENST00000418553 2377 ntBASIC11.97□□□□□ -0.49
CX3CL1P78423 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
CX3CL1P78423 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC11.97□□□□□ -0.49
CX3CL1P78423 ADAMTS7P1-201ENST00000613213 4793 ntBASIC11.97□□□□□ -0.49
CX3CL1P78423 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC11.96□□□□□ -0.49
CX3CL1P78423 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC11.96□□□□□ -0.49
CX3CL1P78423 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
CX3CL1P78423 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CX3CL1P78423 SLC2A11-223ENST00000611880 3264 ntTSL 2 BASIC11.96□□□□□ -0.49
CX3CL1P78423 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC11.96□□□□□ -0.49
CX3CL1P78423 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CX3CL1P78423 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CX3CL1P78423 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC11.96□□□□□ -0.49
CX3CL1P78423 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CX3CL1P78423 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CX3CL1P78423 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC11.96□□□□□ -0.49
CX3CL1P78423 OSBPL5-203ENST00000389989 3619 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
CX3CL1P78423 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CX3CL1P78423 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC11.96□□□□□ -0.49
CX3CL1P78423 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CX3CL1P78423 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CX3CL1P78423 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
CX3CL1P78423 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC11.96□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms