Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 AL355306.1-201ENST00000415580 579 ntBASIC17.34■□□□□ 0.37
MRE11P49959 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MRE11P49959 AL671277.1-201ENST00000429656 993 ntBASIC17.34■□□□□ 0.37
MRE11P49959 AC241585.1-201ENST00000433527 519 ntBASIC17.34■□□□□ 0.37
MRE11P49959 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MRE11P49959 SLC26A6-213ENST00000455886 2460 ntTSL 2 BASIC17.34■□□□□ 0.37
MRE11P49959 INE1-201ENST00000456273 945 ntBASIC17.34■□□□□ 0.37
MRE11P49959 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
MRE11P49959 GSTCD-206ENST00000507281 2091 ntTSL 5 BASIC17.34■□□□□ 0.37
MRE11P49959 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.34■□□□□ 0.37
MRE11P49959 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MRE11P49959 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MRE11P49959 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC17.34■□□□□ 0.37
MRE11P49959 AL009183.1-201ENST00000603760 355 ntBASIC17.34■□□□□ 0.37
MRE11P49959 LAP3-210ENST00000606142 1876 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MRE11P49959 AC020910.6-201ENST00000623084 1459 ntBASIC17.34■□□□□ 0.37
MRE11P49959 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
MRE11P49959 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC17.34■□□□□ 0.37
MRE11P49959 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
MRE11P49959 RMDN1-201ENST00000406452 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MRE11P49959 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
MRE11P49959 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC17.34■□□□□ 0.37
MRE11P49959 FUT8-202ENST00000358307 2664 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
MRE11P49959 APBB1-203ENST00000389906 2684 ntAPPRIS ALT1 TSL 5 BASIC17.34■□□□□ 0.37
MRE11P49959 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
MRE11P49959 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
MRE11P49959 ATP12A-201ENST00000218548 3732 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MRE11P49959 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MRE11P49959 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
MRE11P49959 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
MRE11P49959 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.37
MRE11P49959 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.33■□□□□ 0.37
MRE11P49959 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC17.33■□□□□ 0.37
MRE11P49959 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.36
MRE11P49959 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
MRE11P49959 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.33■□□□□ 0.36
MRE11P49959 SPATA20-227ENST00000634597 2587 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
MRE11P49959 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
MRE11P49959 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MRE11P49959 CASC10-201ENST00000377113 3801 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MRE11P49959 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MRE11P49959 AC002056.1-201ENST00000395613 760 ntBASIC17.33■□□□□ 0.36
MRE11P49959 SPDYE7P-202ENST00000420373 878 ntBASIC17.33■□□□□ 0.36
MRE11P49959 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
MRE11P49959 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
MRE11P49959 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
MRE11P49959 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
MRE11P49959 TPI1-206ENST00000488464 791 ntTSL 5 BASIC17.33■□□□□ 0.36
MRE11P49959 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC17.33■□□□□ 0.36
MRE11P49959 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.33■□□□□ 0.36
MRE11P49959 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
MRE11P49959 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.33■□□□□ 0.36
MRE11P49959 AC111170.3-201ENST00000624282 2464 ntBASIC17.33■□□□□ 0.36
MRE11P49959 SPATA7-217ENST00000556553 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
MRE11P49959 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC17.33■□□□□ 0.36
MRE11P49959 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC17.33■□□□□ 0.36
MRE11P49959 RAB40A-201ENST00000304236 1969 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
MRE11P49959 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC17.33■□□□□ 0.36
MRE11P49959 TOMM40L-209ENST00000545897 2807 ntTSL 2 BASIC17.33■□□□□ 0.36
MRE11P49959 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MRE11P49959 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC17.33■□□□□ 0.36
MRE11P49959 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
MRE11P49959 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
MRE11P49959 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.32■□□□□ 0.36
MRE11P49959 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MRE11P49959 ARHGAP4-201ENST00000350060 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
MRE11P49959 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
MRE11P49959 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.32■□□□□ 0.36
MRE11P49959 ZNF843-202ENST00000564218 3816 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
MRE11P49959 ARHGEF37-201ENST00000333677 4968 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
MRE11P49959 UQCRFS1-201ENST00000304863 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MRE11P49959 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MRE11P49959 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MRE11P49959 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MRE11P49959 PLAT-205ENST00000519510 2030 ntTSL 5 BASIC17.32■□□□□ 0.36
MRE11P49959 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
MRE11P49959 ACSL1-201ENST00000281455 3832 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
MRE11P49959 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC17.32■□□□□ 0.36
MRE11P49959 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.32■□□□□ 0.36
MRE11P49959 SPTLC1P1-201ENST00000447199 261 ntBASIC17.32■□□□□ 0.36
MRE11P49959 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.32■□□□□ 0.36
MRE11P49959 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
MRE11P49959 AC106886.1-201ENST00000568660 600 ntBASIC17.32■□□□□ 0.36
MRE11P49959 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.32■□□□□ 0.36
MRE11P49959 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC17.32■□□□□ 0.36
MRE11P49959 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC17.32■□□□□ 0.36
MRE11P49959 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC17.32■□□□□ 0.36
MRE11P49959 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC17.32■□□□□ 0.36
MRE11P49959 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MRE11P49959 SP6-202ENST00000536300 3848 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
MRE11P49959 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC17.32■□□□□ 0.36
MRE11P49959 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
MRE11P49959 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
MRE11P49959 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
MRE11P49959 HELLS-202ENST00000348459 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MRE11P49959 TMEM47-201ENST00000275954 4054 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
MRE11P49959 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
MRE11P49959 CPNE5-202ENST00000393189 2542 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
MRE11P49959 TTC7A-203ENST00000409245 3033 ntTSL 2 BASIC17.31■□□□□ 0.36
MRE11P49959 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 47.9 ms