Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 PGGT1BP2-201ENST00000398621 1028 ntBASIC13.98□□□□□ -0.17
RFX3P48380 AL035633.1-201ENST00000406139 838 ntBASIC13.98□□□□□ -0.17
RFX3P48380 BAATP1-201ENST00000412284 1225 ntBASIC13.98□□□□□ -0.17
RFX3P48380 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC13.98□□□□□ -0.17
RFX3P48380 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 TTTY23B-201ENST00000442790 549 ntBASIC13.98□□□□□ -0.17
RFX3P48380 AL355864.2-201ENST00000447420 863 ntBASIC13.98□□□□□ -0.17
RFX3P48380 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC13.98□□□□□ -0.17
RFX3P48380 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 AC026434.2-201ENST00000506094 1078 ntBASIC13.98□□□□□ -0.17
RFX3P48380 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
RFX3P48380 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
RFX3P48380 RPS15-202ENST00000585665 467 ntTSL 3 BASIC13.98□□□□□ -0.17
RFX3P48380 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC13.98□□□□□ -0.17
RFX3P48380 AL358472.5-202ENST00000641448 1267 ntBASIC13.98□□□□□ -0.17
RFX3P48380 PRSS30P-206ENST00000641773 873 ntBASIC13.98□□□□□ -0.17
RFX3P48380 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 LINC00384-201ENST00000437721 6852 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC13.98□□□□□ -0.17
RFX3P48380 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
RFX3P48380 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
RFX3P48380 LRRC8C-201ENST00000370454 7218 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 NAPEPLD-201ENST00000341533 4972 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC13.98□□□□□ -0.17
RFX3P48380 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
RFX3P48380 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 KIAA0513-202ENST00000538274 7381 ntTSL 2 BASIC13.98□□□□□ -0.17
RFX3P48380 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.98□□□□□ -0.17
RFX3P48380 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
RFX3P48380 PPIP5K1-209ENST00000420765 5718 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
RFX3P48380 PDE8B-203ENST00000340978 3426 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 MMAB-210ENST00000545712 4438 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 TP73-201ENST00000346387 4854 ntTSL 5 BASIC13.97□□□□□ -0.17
RFX3P48380 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC13.97□□□□□ -0.17
RFX3P48380 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
RFX3P48380 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC13.97□□□□□ -0.17
RFX3P48380 ABCA2-201ENST00000265662 8154 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
RFX3P48380 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
RFX3P48380 DENND3-202ENST00000424248 4740 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC13.97□□□□□ -0.17
RFX3P48380 HIC2-203ENST00000443632 6940 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC13.97□□□□□ -0.17
RFX3P48380 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC13.97□□□□□ -0.17
RFX3P48380 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC13.97□□□□□ -0.17
RFX3P48380 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC13.97□□□□□ -0.17
RFX3P48380 ACTBP8-201ENST00000403258 1108 ntBASIC13.97□□□□□ -0.17
RFX3P48380 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC13.97□□□□□ -0.17
RFX3P48380 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC13.97□□□□□ -0.17
RFX3P48380 EIF3FP3-201ENST00000434851 1086 ntBASIC13.97□□□□□ -0.17
RFX3P48380 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC13.97□□□□□ -0.17
RFX3P48380 KRT17P7-201ENST00000451704 1104 ntBASIC13.97□□□□□ -0.17
RFX3P48380 AC007389.4-201ENST00000454674 793 ntBASIC13.97□□□□□ -0.17
RFX3P48380 AC022137.2-201ENST00000503482 481 ntBASIC13.97□□□□□ -0.17
RFX3P48380 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
RFX3P48380 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC13.97□□□□□ -0.17
RFX3P48380 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
RFX3P48380 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC13.97□□□□□ -0.17
RFX3P48380 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC13.97□□□□□ -0.17
RFX3P48380 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC13.97□□□□□ -0.17
RFX3P48380 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
RFX3P48380 SRP9-204ENST00000619790 377 ntTSL 2 BASIC13.97□□□□□ -0.17
RFX3P48380 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
RFX3P48380 PWWP2A-201ENST00000307063 3346 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 DLGAP1-213ENST00000534970 2365 ntTSL 2 BASIC13.97□□□□□ -0.17
RFX3P48380 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC13.97□□□□□ -0.17
RFX3P48380 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC13.97□□□□□ -0.17
RFX3P48380 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC13.97□□□□□ -0.17
RFX3P48380 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 EIF4G1-219ENST00000435046 4668 ntTSL 5 BASIC13.97□□□□□ -0.17
RFX3P48380 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
RFX3P48380 PODN-207ENST00000618387 3065 ntAPPRIS ALT2 TSL 2 BASIC13.96□□□□□ -0.17
RFX3P48380 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 POLG-201ENST00000268124 4500 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
RFX3P48380 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC13.96□□□□□ -0.17
RFX3P48380 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.96□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms