Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 POMK-201ENST00000331373 1865 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 PNPLA5-204ENST00000593866 2197 ntTSL 2 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 AL357563.1-201ENST00000404728 395 ntBASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 AC234644.1-201ENST00000406065 370 ntBASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 RN7SKP109-201ENST00000410592 316 ntBASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 DPY19L2P5-201ENST00000456300 331 ntBASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 NEU3-207ENST00000534628 746 ntTSL 2 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 KRT8P1-201ENST00000557533 1207 ntBASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 AC104961.2-201ENST00000578129 663 ntTSL 2 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 AC109466.1-209ENST00000486913 1618 ntTSL 2 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 RABL2B-202ENST00000395590 2380 ntTSL 2 BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
CSB-PGBD3P0DP91 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 ACTG1P17-202ENST00000560958 1662 ntTSL 2 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 NORAD-201ENST00000565493 5339 ntBASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 LCMT1-202ENST00000380966 989 ntTSL 2 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 GUSBP10-201ENST00000417412 665 ntBASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 Metazoa_SRP.100-201ENST00000447610 282 ntBASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 AC026410.1-201ENST00000507366 1101 ntBASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 RPS23-204ENST00000507980 836 ntTSL 2 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 DRG2-220ENST00000583355 891 ntTSL 3 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 AC006158.1-201ENST00000610661 249 ntBASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 FO393412.1-201ENST00000619841 382 ntBASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 MRGPRX4-201ENST00000314254 1444 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 SYT13-201ENST00000020926 5144 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CSB-PGBD3P0DP91 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CSB-PGBD3P0DP91 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CSB-PGBD3P0DP91 LIMS2-209ENST00000410038 1695 ntTSL 2 BASIC19.33■□□□□ 0.69
CSB-PGBD3P0DP91 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CSB-PGBD3P0DP91 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CSB-PGBD3P0DP91 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CSB-PGBD3P0DP91 API5-208ENST00000531273 1868 ntTSL 2 BASIC19.33■□□□□ 0.69
CSB-PGBD3P0DP91 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
CSB-PGBD3P0DP91 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
CSB-PGBD3P0DP91 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC19.33■□□□□ 0.69
CSB-PGBD3P0DP91 ZNF691-206ENST00000372508 1577 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
CSB-PGBD3P0DP91 AP002353.1-201ENST00000528257 1599 ntBASIC19.33■□□□□ 0.69
CSB-PGBD3P0DP91 EDNRB-204ENST00000626030 1571 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CSB-PGBD3P0DP91 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
CSB-PGBD3P0DP91 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
CSB-PGBD3P0DP91 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 LINC00634-202ENST00000505157 222 ntBASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 AC107463.1-201ENST00000508605 667 ntTSL 3 BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 ZNF77-201ENST00000314531 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 METTL17-201ENST00000339374 1749 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 AC006504.5-208ENST00000588784 2401 ntBASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 LINC00963-203ENST00000423918 1654 ntTSL 2 BASIC19.33■□□□□ 0.68
CSB-PGBD3P0DP91 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 86.5 ms