Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 KRT8P13-201ENST00000463294 1010 ntBASIC14.88□□□□□ -0.03
DKK3Q9UBP4 OARD1-212ENST00000482515 832 ntTSL 2 BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 AP001258.2-201ENST00000529891 490 ntBASIC14.88□□□□□ -0.03
DKK3Q9UBP4 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 AC034102.5-201ENST00000548731 540 ntTSL 4 BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 AC100827.2-201ENST00000563214 1194 ntBASIC14.88□□□□□ -0.03
DKK3Q9UBP4 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 AC243960.2-201ENST00000600996 747 ntBASIC14.88□□□□□ -0.03
DKK3Q9UBP4 HNF1B-204ENST00000617811 2977 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 AC027601.3-201ENST00000622907 509 ntBASIC14.88□□□□□ -0.03
DKK3Q9UBP4 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 E2F3P2-201ENST00000447755 1422 ntBASIC14.88□□□□□ -0.03
DKK3Q9UBP4 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 CALCR-203ENST00000394441 1774 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 SLC25A18-201ENST00000327451 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC14.88□□□□□ -0.03
DKK3Q9UBP4 SLC9A7P1-201ENST00000554295 3311 ntBASIC14.87□□□□□ -0.03
DKK3Q9UBP4 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 AL136172.1-201ENST00000598590 1394 ntBASIC14.87□□□□□ -0.03
DKK3Q9UBP4 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 MSI2-202ENST00000322684 1860 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 SLC27A4-201ENST00000300456 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 FRMD3-202ENST00000328788 964 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 RBM8A-201ENST00000369307 796 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 GPAA1P2-201ENST00000417923 928 ntBASIC14.87□□□□□ -0.03
DKK3Q9UBP4 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 CICP12-201ENST00000455801 843 ntBASIC14.87□□□□□ -0.03
DKK3Q9UBP4 AC091804.1-201ENST00000486888 567 ntBASIC14.87□□□□□ -0.03
DKK3Q9UBP4 ZNF767P-206ENST00000513792 565 ntBASIC14.87□□□□□ -0.03
DKK3Q9UBP4 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 MT1H-202ENST00000569155 697 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 AC005324.6-201ENST00000587972 613 ntBASIC14.87□□□□□ -0.03
DKK3Q9UBP4 MIR6787-201ENST00000616675 61 ntBASIC14.87□□□□□ -0.03
DKK3Q9UBP4 MVK-217ENST00000639206 367 ntTSL 5 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
DKK3Q9UBP4 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 MYRF-203ENST00000389602 2052 ntTSL 2 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 PIGG-202ENST00000383028 2787 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 ACSF2-202ENST00000427954 2251 ntTSL 2 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 BCAR3-210ENST00000539242 2114 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
DKK3Q9UBP4 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.8 ms