Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 HDAC2-AS2-213ENST00000520891 603 ntTSL 4 BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 SNORD3B-2-202ENST00000571722 791 ntBASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 AC005962.1-201ENST00000584100 773 ntBASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 AC008805.1-201ENST00000590892 364 ntBASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 AC100757.4-201ENST00000626934 759 ntBASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
CLCF1Q9UBD9 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 F10-203ENST00000409306 1450 ntTSL 3 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 FAM90A7P-201ENST00000382628 1395 ntBASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 FAM90A23P-201ENST00000400136 1395 ntBASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 MIR769-201ENST00000390225 118 ntBASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 CYP46A4P-201ENST00000414953 267 ntBASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 KRTAP19-9P-201ENST00000421795 191 ntBASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 LINC00278-201ENST00000425031 528 ntTSL 2 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 AC125604.1-201ENST00000496255 707 ntBASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 AL160314.3-201ENST00000556041 767 ntBASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 AL132994.2-201ENST00000603120 687 ntBASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 AC091544.8-201ENST00000619490 361 ntBASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 AC104640.1-201ENST00000562617 2109 ntBASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CLCF1Q9UBD9 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 PDE9A-208ENST00000398225 1963 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CLCF1Q9UBD9 SLC16A6P1-201ENST00000413214 1059 ntBASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms