Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 USP31-203ENST00000567975 2142 ntTSL 2 BASIC18.79■□□□□ 0.6
CHMP4AQ9BY43 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 MLF1-201ENST00000355893 2203 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 AGGF1P1-201ENST00000509500 2073 ntBASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 COLEC11-203ENST00000382062 1633 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 AC018529.2-202ENST00000611482 3087 ntBASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 CDK5RAP3-201ENST00000338399 1866 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 LINC01285-201ENST00000412422 2289 ntTSL 2 BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 FCRLB-201ENST00000336830 1193 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 RN7SKP214-201ENST00000364208 315 ntBASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 MIR769-201ENST00000390225 118 ntBASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 FNTAP2-201ENST00000430308 634 ntBASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 AC006122.1-201ENST00000493323 440 ntBASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 IGHVIII-5-2-201ENST00000522505 261 ntBASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 AL139099.5-201ENST00000635274 300 ntBASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 AL805961.1-203ENST00000641078 1258 ntBASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 AL354702.1-201ENST00000442006 1960 ntBASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 PDYN-AS1-201ENST00000446562 1802 ntTSL 2 BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 AC097376.2-205ENST00000610159 5334 ntBASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 ZFP36-203ENST00000597629 1786 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP4AQ9BY43 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 AC082651.4-201ENST00000483023 1852 ntTSL 5 BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 MYADML-201ENST00000474610 2147 ntBASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 AC010973.2-201ENST00000485974 1230 ntTSL 2 BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 MUC1-226ENST00000614519 1093 ntTSL 2 BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP4AQ9BY43 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
CHMP4AQ9BY43 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
CHMP4AQ9BY43 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
CHMP4AQ9BY43 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
CHMP4AQ9BY43 SERINC2-206ENST00000536859 2072 ntTSL 2 BASIC18.77■□□□□ 0.59
CHMP4AQ9BY43 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CHMP4AQ9BY43 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CHMP4AQ9BY43 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 RPARP-AS1-202ENST00000492465 1556 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 MVK-214ENST00000629016 1591 ntTSL 5 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 MBLAC2-202ENST00000514906 1936 ntBASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 CRCP-204ENST00000398684 492 ntTSL 2 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 SCARNA21-201ENST00000517026 139 ntBASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 GNG2-209ENST00000555472 908 ntAPPRIS P1 TSL 3 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 PAM16-211ENST00000575848 518 ntTSL 3 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CHMP4AQ9BY43 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms